Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

18972989 .. 18976158

Gene Structure 3170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAATAGACCACTTCTTTTCCATTTGAGATTGTTTTCATTCACAAATAGTGACACTCACCTTTTCTTTTTTTTAGGTTGGACTAGCGAGAAGTTTTTTAAGGATGGATTGTCTTTAGATTTGGAAGGTGGGCAGGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTATTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGAAAACGGGGCAGAGCATGCATTGCCACCCCCACCCCATGTTATCCCTCCAGATGTTGTTCCATTGCATGCTCCTATAGATATTACACCTGAACCTTTTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

178

Amino Acids

19.75

Weight (kDa)

5.54

Isoelectric Point (pI)

30.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	161, 313
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	179, 212, 248
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AlwI	GGATC	2 cut(s)	161, 313
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	157, 185
AspLEI	GCGC	2 cut(s)	326, 453
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	169, 197
BccI	CCATC	2 cut(s)	98, 138
BciT130I	CCWGG	1 cut(s)	141
BfaI	CTAG	2 cut(s)	84, 465
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	2 cut(s)	158, 186
BlsI	GCNGC	2 cut(s)	159, 187
Bme1390I	CCNGG	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	172
BpmI	CTGGAG	2 cut(s)	123, 381
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse3DI	GCAATG	2 cut(s)	368, 410
Bse8I	GATNNNNATC	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	2 cut(s)	109, 149
BseJI	GATNNNNATC	1 cut(s)	520
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	368, 410
BseXI	GCAGC	2 cut(s)	169, 197
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	166, 305
BspANI	GGCC	1 cut(s)	474
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	161, 313
BspQI	GCTCTTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	368, 410
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	2 cut(s)	166, 305
BssT1I	CCWWGG	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	197
BstAPI	GCANNNNNTGC	3 cut(s)	154, 365, 370
BstC8I	GCNNGC	3 cut(s)	135, 366, 417
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	109, 149
BstHHI	GCGC	2 cut(s)	326, 453
BstKTI	GATC	2 cut(s)	169, 308
BstMBI	GATC	2 cut(s)	166, 305
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 365, 370
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	2 cut(s)	368, 419
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	169, 197
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	109, 149
Cac8I	GCNNGC	3 cut(s)	135, 366, 417
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	2 cut(s)	326, 453
CseI	GACGC	1 cut(s)	350
CviAII	CATG	6 cut(s)	164, 194, 260, 365, 386, 416
CviJI	RGCY	8 cut(s)	137, 160, 188, 207, 244, 275, 292, 474
CviKI_1	RGCY	8 cut(s)	137, 160, 188, 207, 244, 275, 292, 474
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	168, 307
DpnII	GATC	2 cut(s)	166, 305
DraI	TTTAAA	1 cut(s)	520
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	475
Eco147I	AGGCCT	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	475
FaeI	CATG	6 cut(s)	167, 197, 263, 368, 389, 419
FatI	CATG	6 cut(s)	163, 193, 259, 364, 385, 415
Fnu4HI	GCNGC	2 cut(s)	158, 186
FokI	GGATG	2 cut(s)	116, 156
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	158, 186
FspBI	CTAG	2 cut(s)	84, 465
GlaI	GCGC	2 cut(s)	325, 452
GluI	GCNGC	2 cut(s)	158, 186
GsuI	CTGGAG	2 cut(s)	123, 381
HaeIII	GGCC	1 cut(s)	474
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	2 cut(s)	326, 453
Hin1II	CATG	6 cut(s)	167, 197, 263, 368, 389, 419
Hin6I	GCGC	2 cut(s)	324, 451
HinP1I	GCGC	2 cut(s)	324, 451
HinfI	GANTC	2 cut(s)	281, 496
HphI	GGTGA	1 cut(s)	50
Hpy188III	TCNNGA	4 cut(s)	164, 179, 248, 398
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	119, 218
HpyCH4V	TGCA	4 cut(s)	157, 185, 368, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 365, 370
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	6 cut(s)	167, 197, 263, 368, 389, 419
HspAI	GCGC	2 cut(s)	324, 451
Kzo9I	GATC	2 cut(s)	166, 305
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	142, 424
LpnPI	CCDG	5 cut(s)	119, 126, 153, 411, 450
Lsp1109I	GCAGC	2 cut(s)	169, 197
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	84, 465
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	168, 307
MboI	GATC	2 cut(s)	166, 305
MboII	GAAGA	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	223, 459
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	171, 180, 265, 405, 464, 510
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	2 cut(s)	99, 519
MspR9I	CCNGG	1 cut(s)	141
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	154, 365, 370
NdeII	GATC	2 cut(s)	166, 305
NlaIII	CATG	6 cut(s)	167, 197, 263, 368, 389, 419
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	2 cut(s)	368, 419
PaeI	GCATGC	2 cut(s)	368, 419
PagI	TCATGA	1 cut(s)	163
PceI	AGGCCT	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	281, 496
PfoI	TCCNGGA	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	159, 187
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	99, 519
SatI	GCNGC	2 cut(s)	158, 186
Sau3AI	GATC	2 cut(s)	166, 305
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	6 cut(s)	63, 79, 130, 246, 439, 445
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	423
SmiI	ATTTAAAT	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
SphI	GCATGC	2 cut(s)	368, 419
Sse9I	AATT	2 cut(s)	223, 459
SseBI	AGGCCT	1 cut(s)	474
SspMI	CTAG	2 cut(s)	84, 465
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	475
SwaI	ATTTAAAT	1 cut(s)	520
TasI	AATT	2 cut(s)	223, 459
TfiI	GAWTC	2 cut(s)	281, 496
Tru1I	TTAA	2 cut(s)	99, 519
Tru9I	TTAA	2 cut(s)	99, 519
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	2 cut(s)	157, 185
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	5 cut(s)	17, 27, 216, 273, 363
XceI	RCATGY	2 cut(s)	368, 419
XspI	CTAG	2 cut(s)	84, 465
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.