Rorug06G0064700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000575
Physical Location & Seq
Reverse (-)
8602813 .. 8605247
2435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0064700.1

Sequence Viewer

Length: 276 bp
ATGGCTTTGCGCTCTGCTGGTTCGCTCTCTCGGTCCTTGGCCTCCACCGCTAGGGTTTCGCTCCACCGCTCCGCCCCAACTCTCCGGCGCCTCCGCCCGCCGACCGCTCCGGCCACTCGCCGCTTCTCCTTCACCTCTCCCAGGAACTTGGGAGAACTGGGATGCACACAGTCGCTGCTGCATATGCGAGCTGCAACATGCCTCACATCTCACCTGACTGTCAATGCGCGTGCTTGTTGCGAGTTGTCCCACGGAAGGAATGGAAAAGATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.77

Weight (kDa)

11.8

Isoelectric Point (pI)

73.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AccBSI CCGCTC 2 cut(s) 69, 107
AccII CGCG 1 cut(s) 229
AciI CCGC 7 cut(s) 48, 67, 72, 94, 98, 105, 121
AcoI YGGCCR 1 cut(s) 111
AcyI GRCGYC 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 51, 141, 255
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 175
AoxI GGCC 2 cut(s) 39, 111
ApeKI GCWGC 3 cut(s) 175, 178, 191
AspLEI GCGC 3 cut(s) 12, 90, 229
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 124, 203
AvaII GGWCC 1 cut(s) 33
BanI GGYRCC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 162, 165, 178
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 142
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 91
BisI GCNGC 4 cut(s) 121, 176, 179, 192
BlsI GCNGC 4 cut(s) 122, 177, 180, 193
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 88
BsaJI CCNNGG 3 cut(s) 36, 140, 250
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 141, 255
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 3 cut(s) 36, 140, 250
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 3 cut(s) 51, 141, 255
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 162, 165, 178
Bsh1236I CGCG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 41, 113
BshNI GGYRCC 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 105
BsiSI CCGG 2 cut(s) 85, 110
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 3 cut(s) 51, 141, 255
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 2 cut(s) 41, 113
BspACI CCGC 7 cut(s) 48, 67, 72, 94, 98, 105, 121
BspANI GGCC 2 cut(s) 41, 113
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 87
BsrBI CCGCTC 2 cut(s) 69, 107
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 3 cut(s) 36, 140, 250
BssNI GRCGYC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 171, 220
BstACI GRCGYC 1 cut(s) 88
BstC8I GCNNGC 3 cut(s) 98, 189, 231
BstDSI CCRYGG 1 cut(s) 250
BstENI CCTNNNNNAGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 3 cut(s) 12, 90, 229
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 47, 184
BstNI CCWGG 1 cut(s) 142
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 140
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 3 cut(s) 162, 165, 178
BstXI CCANNNNNNTGG 1 cut(s) 148
BsuRI GGCC 2 cut(s) 41, 113
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 3 cut(s) 98, 189, 231
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 3 cut(s) 12, 90, 229
Cfr13I GGNCC 1 cut(s) 33
CviAII CATG 1 cut(s) 198
CviJI RGCY 4 cut(s) 5, 41, 113, 191
CviKI_1 RGCY 4 cut(s) 5, 41, 113, 191
DinI GGCGCC 1 cut(s) 89
EaeI YGGCCR 1 cut(s) 111
EciI GGCGGA 2 cut(s) 61, 83
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 89
EheI GGCGCC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 201
FaiI YATR 3 cut(s) 183, 185, 199
FaqI GGGAC 1 cut(s) 232
FatI CATG 1 cut(s) 197
FauI CCCGC 1 cut(s) 105
FauNDI CATATG 1 cut(s) 183
Fnu4HI GCNGC 4 cut(s) 121, 176, 179, 192
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 121, 176, 179, 192
FspBI CTAG 1 cut(s) 51
GlaI GCGC 3 cut(s) 11, 89, 228
GluI GCNGC 4 cut(s) 121, 176, 179, 192
HaeII RGCGCY 1 cut(s) 91
HaeIII GGCC 2 cut(s) 41, 113
HapII CCGG 2 cut(s) 85, 110
HhaI GCGC 3 cut(s) 12, 90, 229
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 3 cut(s) 10, 88, 227
HinP1I GCGC 3 cut(s) 10, 88, 227
HpaII CCGG 2 cut(s) 85, 110
HphI GGTGA 2 cut(s) 124, 203
HpyAV CCTTC 2 cut(s) 139, 249
HpyCH4III ACNGT 2 cut(s) 171, 220
HpyCH4V TGCA 3 cut(s) 165, 181, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 184
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 3 cut(s) 10, 88, 227
KasI GGCGCC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 66, 74, 112
LpnPI CCDG 7 cut(s) 3, 98, 123, 127, 143, 154, 227
Lsp1109I GCAGC 3 cut(s) 162, 165, 178
LweI GCATC 1 cut(s) 152
MaeI CTAG 1 cut(s) 51
MbiI CCGCTC 2 cut(s) 69, 107
Mly113I GGCGCC 1 cut(s) 88
MnlI CCTC 4 cut(s) 52, 101, 145, 212
MspI CCGG 2 cut(s) 85, 110
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 2 cut(s) 47, 184
NarI GGCGCC 1 cut(s) 88
NdeI CATATG 1 cut(s) 183
NlaIII CATG 1 cut(s) 201
NlaIV GGNNCC 1 cut(s) 89
NspI RCATGY 1 cut(s) 201
PkrI GCNGC 4 cut(s) 122, 177, 180, 193
PluTI GGCGCC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 175
SatI GCNGC 4 cut(s) 121, 176, 179, 192
Sau96I GGNCC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 142
SetI ASST 3 cut(s) 137, 193, 216
SfaNI GCATC 1 cut(s) 152
SfoI GGCGCC 1 cut(s) 89
SinI GGWCC 1 cut(s) 33
SsiI CCGC 7 cut(s) 48, 67, 72, 94, 98, 105, 121
SspDI GGCGCC 1 cut(s) 87
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 171, 220
TaqII GACCGA 1 cut(s) 21
TauI GCSGC 1 cut(s) 123
TseI GCWGC 3 cut(s) 175, 178, 191
TspGWI ACGGA 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 33
XagI CCTNNNNNAGG 1 cut(s) 139
XceI RCATGY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.