Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

5184972 .. 5188819

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTAAGCTGCCGTCCTGGGTTGAAAGTTTTGACCCCTTATTCATCTGAAGATGCTCATGGACTGCTAAAAGCTGCCATTAGGGACCCTGATCATGTTGTTTTTCTTGAAAATGAGTTGCTGAAAGATTCTCACAATAGTCTCTGTAGTAGTTTGACTGCAAAGAAGCAAGGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGAAACAAATGGAGAGAATGGCGCAAATGTAGAAAATGTCGCAAATGGAGAAAAGAGGGCAGAGCATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGGAGAAGATTGTGCGCCTACCAATTGCTAGGCTAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATGTCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

198

Amino Acids

21.63

Weight (kDa)

6.23

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	5 cut(s)	25, 110, 224, 257, 293
AjnI	CCWGG	2 cut(s)	16, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	260, 292
AluBI	AGCT	3 cut(s)	9, 74, 289
AluI	AGCT	3 cut(s)	9, 74, 289
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	4 cut(s)	9, 74, 202, 230
AspLEI	GCGC	2 cut(s)	371, 513
AspS9I	GGNCC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	61, 214, 242
BccI	CCATC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	18, 186
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	2 cut(s)	525, 530
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	4 cut(s)	10, 75, 203, 231
BlsI	GCNGC	4 cut(s)	11, 76, 204, 232
Bme1390I	CCNGG	2 cut(s)	18, 186
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	86, 87
BmrFI	CCNGG	2 cut(s)	18, 186
BmsI	GCATC	2 cut(s)	43, 217
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	201, 453
BsaJI	CCNNGG	2 cut(s)	17, 535
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse3DI	GCAATG	2 cut(s)	416, 458
BseBI	CCWGG	2 cut(s)	18, 186
BseDI	CCNNGG	2 cut(s)	17, 535
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	2 cut(s)	416, 458
BseXI	GCAGC	3 cut(s)	61, 214, 242
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	534
BsiHKAI	GWGCWC	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	339, 469
Bsp143I	GATC	2 cut(s)	91, 211
BspANI	GGCC	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	86, 87
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	416, 458
BssECI	CCNNGG	2 cut(s)	17, 535
BssMI	GATC	2 cut(s)	91, 211
BssT1I	CCWWGG	1 cut(s)	535
Bst2UI	CCWGG	2 cut(s)	18, 186
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	3 cut(s)	199, 413, 418
BstC8I	GCNNGC	3 cut(s)	180, 414, 465
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	371, 513
BstKTI	GATC	2 cut(s)	94, 214
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	91, 211
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 199, 413, 418
BstNI	CCWGG	2 cut(s)	18, 186
BstNSI	RCATGY	2 cut(s)	182, 416
BstSCI	CCNGG	2 cut(s)	16, 184
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	61, 214, 242
BsuRI	GGCC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	180, 414, 465
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	371, 513
Cfr13I	GGNCC	1 cut(s)	85
CviAII	CATG	7 cut(s)	59, 95, 179, 209, 239, 305, 413
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	93, 213
DpnII	GATC	2 cut(s)	91, 211
DraI	TTTAAA	2 cut(s)	495, 580
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	16, 184
EcoT14I	CCWWGG	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	7 cut(s)	62, 98, 182, 212, 242, 308, 416
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	7 cut(s)	58, 94, 178, 208, 238, 304, 412
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	10, 75, 203, 231
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	10, 75, 203, 231
FspBI	CTAG	2 cut(s)	525, 530
GlaI	GCGC	2 cut(s)	370, 512
GluI	GCNGC	4 cut(s)	10, 75, 203, 231
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	534
HhaI	GCGC	2 cut(s)	371, 513
Hin1II	CATG	7 cut(s)	62, 98, 182, 212, 242, 308, 416
Hin6I	GCGC	2 cut(s)	369, 511
HinP1I	GCGC	2 cut(s)	369, 511
HinfI	GANTC	3 cut(s)	128, 326, 556
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	4 cut(s)	107, 209, 224, 293
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	161, 202, 230, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 199, 413, 418
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	7 cut(s)	62, 98, 182, 212, 242, 308, 416
HspAI	GCGC	2 cut(s)	369, 511
KflI	GGGWCCC	1 cut(s)	85
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 211
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	8 cut(s)	3, 30, 102, 171, 198, 447, 459, 498
Lsp1109I	GCAGC	3 cut(s)	61, 214, 242
LweI	GCATC	2 cut(s)	43, 217
MaeI	CTAG	2 cut(s)	525, 530
MalI	GATC	2 cut(s)	93, 213
MboI	GATC	2 cut(s)	91, 211
MboII	GAAGA	3 cut(s)	62, 259, 514
MfeI	CAATTG	1 cut(s)	519
MhlI	GDGCHC	2 cut(s)	339, 469
MluCI	AATT	2 cut(s)	268, 519
MnlI	CCTC	5 cut(s)	216, 225, 310, 396, 570
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	2 cut(s)	494, 579
MspR9I	CCNGG	2 cut(s)	18, 186
MunI	CAATTG	1 cut(s)	519
MvaI	CCWGG	2 cut(s)	18, 186
MwoI	GCNNNNNNNGC	4 cut(s)	175, 199, 413, 418
NdeII	GATC	2 cut(s)	91, 211
NlaIII	CATG	7 cut(s)	62, 98, 182, 212, 242, 308, 416
NlaIV	GGNNCC	2 cut(s)	86, 87
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	2 cut(s)	182, 416
PaeI	GCATGC	2 cut(s)	182, 416
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	128, 326, 556
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	4 cut(s)	11, 76, 204, 232
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	16, 184
PspGI	CCWGG	2 cut(s)	16, 184
PspN4I	GGNNCC	2 cut(s)	86, 87
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	494, 579
SatI	GCNGC	4 cut(s)	10, 75, 203, 231
Sau3AI	GATC	2 cut(s)	91, 211
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	18, 186
SduI	GDGCHC	2 cut(s)	339, 469
SetI	ASST	6 cut(s)	11, 76, 175, 291, 487, 493
SfaNI	GCATC	2 cut(s)	43, 217
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	85
SmiI	ATTTAAAT	1 cut(s)	580
SmlI	CTYRAG	2 cut(s)	216, 468
SmoI	CTYRAG	2 cut(s)	216, 468
SphI	GCATGC	2 cut(s)	182, 416
Sse9I	AATT	2 cut(s)	268, 519
SseBI	AGGCCT	1 cut(s)	534
SspMI	CTAG	2 cut(s)	525, 530
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	16, 184
StyI	CCWWGG	1 cut(s)	535
SwaI	ATTTAAAT	1 cut(s)	580
TasI	AATT	2 cut(s)	268, 519
TfiI	GAWTC	3 cut(s)	128, 326, 556
Tru1I	TTAA	2 cut(s)	494, 579
Tru9I	TTAA	2 cut(s)	494, 579
TseI	GCWGC	4 cut(s)	9, 74, 202, 230
TspDTI	ATGAA	4 cut(s)	33, 261, 318, 363
VpaK11BI	GGWCC	1 cut(s)	85
XceI	RCATGY	2 cut(s)	182, 416
XspI	CTAG	2 cut(s)	525, 530
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.