Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

44877859 .. 44879876

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGACAATGGCCTCAACGAGGACTTCGGTTACGATCCAGATATTTACTGCTTTGACACCTCGCTGCAAGCGTCCGATTCGTATCATGTGAACATCAATCCAGAAGTTATCTGCAATGATGATGCTGCTTGGGAAAAAGAGGTGGTACCAGCTTTTGCTGAACTTGGCTTTATATGCACATGGACCAGCGATAATAAGATGGGATTTTCGATCGATCCAAAACTAGGGCCGCTTGAGGACACCAGTGTCTTCTTCAGGGCTGTGAATGCTTTAAATGCTTTTGCATACGGTTTTCCTGCACATTGGATAACTCATTCTTTTGCGTTGTTTTCTTTCTCCTTTGTTCTTTCCGCACACTTATTTCTCTCCTTCACTGCAACAGCATGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.5

Weight (kDa)

4.25

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AciI	CCGC	2 cut(s)	230, 351
AclWI	GGATC	2 cut(s)	29, 209
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	19, 224
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	2 cut(s)	29, 209
AoxI	GGCC	2 cut(s)	10, 227
ApeKI	GCWGC	2 cut(s)	64, 125
Asp718I	GGTACC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	183, 227
AvaII	GGWCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	51, 112
BccI	CCATC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	3 cut(s)	65, 126, 230
BlsI	GCNGC	3 cut(s)	66, 127, 231
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	183, 227
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 224
Bse1I	ACTGG	1 cut(s)	243
Bse3DI	GCAATG	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	2 cut(s)	19, 224
BseMI	GCAATG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	51, 112
BsgI	GTGCAG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	12, 229
BshNI	GGYRCC	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	19, 224
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	12, 229
Bsp143I	GATC	3 cut(s)	34, 210, 214
BspACI	CCGC	2 cut(s)	230, 351
BspANI	GGCC	2 cut(s)	12, 229
BspDI	ATCGAT	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	29, 209
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	34, 210, 214
Bst4CI	ACNGT	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	37, 213, 217
BstMBI	GATC	3 cut(s)	34, 210, 214
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 266, 275
BstNSI	RCATGY	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	51, 112
BstV2I	GAAGAC	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	12, 229
BsuTUI	ATCGAT	1 cut(s)	213
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	250, 372
Cac8I	GCNNGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	183, 227
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	3 cut(s)	86, 180, 384
CviJI	RGCY	5 cut(s)	12, 152, 168, 229, 260
CviKI_1	RGCY	5 cut(s)	12, 152, 168, 229, 260
CviQI	GTAC	1 cut(s)	146
DpnI	GATC	3 cut(s)	36, 212, 216
DpnII	GATC	3 cut(s)	34, 210, 214
DraI	TTTAAA	1 cut(s)	273
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	238
EcoNI	CCTNNNNNAGG	1 cut(s)	17
FaeI	CATG	3 cut(s)	89, 183, 387
FaiI	YATR	6 cut(s)	87, 173, 175, 181, 286, 385
FatI	CATG	3 cut(s)	85, 179, 383
Fnu4HI	GCNGC	3 cut(s)	65, 126, 230
Fsp4HI	GCNGC	3 cut(s)	65, 126, 230
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	65, 126, 230
HaeIII	GGCC	2 cut(s)	12, 229
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	89, 183, 387
HinfI	GANTC	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	2 cut(s)	38, 101
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	6 cut(s)	67, 114, 177, 284, 299, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 266, 275
Hsp92II	CATG	3 cut(s)	89, 183, 387
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	34, 210, 214
LpnPI	CCDG	7 cut(s)	51, 114, 162, 199, 241, 256, 309
Lsp1109I	GCAGC	2 cut(s)	51, 112
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	3 cut(s)	36, 212, 216
MboI	GATC	3 cut(s)	34, 210, 214
MboII	GAAGA	2 cut(s)	241, 244
MnlI	CCTC	5 cut(s)	13, 23, 70, 133, 229
MseI	TTAA	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	174, 266, 275
NdeII	GATC	3 cut(s)	34, 210, 214
NlaIII	CATG	3 cut(s)	89, 183, 387
NlaIV	GGNNCC	1 cut(s)	147
NspI	RCATGY	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	66, 127, 231
Ple19I	CGATCG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	2 cut(s)	183, 227
PvuI	CGATCG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	3 cut(s)	65, 126, 230
Sau3AI	GATC	3 cut(s)	34, 210, 214
Sau96I	GGNCC	2 cut(s)	183, 227
SetI	ASST	3 cut(s)	62, 144, 154
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	2 cut(s)	230, 351
SspMI	CTAG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	2 cut(s)	209, 213
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	250, 379
TseI	GCWGC	2 cut(s)	64, 125
TspRI	CASTG	2 cut(s)	250, 379
VpaK11BI	GGWCC	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	17
XceI	RCATGY	1 cut(s)	387
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.