Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

60294707 .. 60299229

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTCTGTACTTCGCTCCTCGCAGCTCATCACTTTGTCTGTGATGGCGTAGATAGCCCCTGTGTTCGCAAATTCAATCAAGGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGAACAAATGGAGAGAATGGCGCAAATGTAGAAAAAGACGCAAATGGAGAAAACAGGGTAGATGGAAACGGGGCAGAGCATGCATTGCCACCCCCACCCCCTGTTATCCCACCTGATGTTGTTCCATTACGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGGAGAAGATTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

173

Amino Acids

18.77

Weight (kDa)

6.14

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	4 cut(s)	76, 134, 167, 203
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	2 cut(s)	26, 199
AluI	AGCT	2 cut(s)	26, 199
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	23, 112, 140
ApoI	RAATTY	1 cut(s)	71
AspLEI	GCGC	2 cut(s)	281, 438
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	3 cut(s)	35, 124, 152
BccI	CCATC	3 cut(s)	38, 93, 314
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	1 cut(s)	450
BisI	GCNGC	3 cut(s)	24, 113, 141
BlsI	GCNGC	3 cut(s)	25, 114, 142
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	127
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	111, 378
BsaAI	YACGTR	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	341
Bse8I	GATNNNNATC	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	3 cut(s)	35, 124, 152
BsgI	GTGCAG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	249, 394
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	118
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	460
Bst2UI	CCWGG	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	3 cut(s)	109, 338, 343
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	2 cut(s)	90, 339
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	281, 438
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 109, 338, 343
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	2 cut(s)	92, 341
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	3 cut(s)	35, 124, 152
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	90, 339
CciI	TCATGA	1 cut(s)	118
CfoI	GCGC	2 cut(s)	281, 438
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	9
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	5 cut(s)	89, 119, 149, 215, 338
CviJI	RGCY	9 cut(s)	26, 57, 115, 143, 162, 199, 230, 247, 459
CviKI_1	RGCY	9 cut(s)	26, 57, 115, 143, 162, 199, 230, 247, 459
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraI	TTTAAA	2 cut(s)	420, 505
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	460
Eco147I	AGGCCT	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	460
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	460
FaeI	CATG	5 cut(s)	92, 122, 152, 218, 341
FaiI	YATR	8 cut(s)	90, 120, 150, 195, 216, 233, 252, 339
FatI	CATG	5 cut(s)	88, 118, 148, 214, 337
Fnu4HI	GCNGC	3 cut(s)	24, 113, 141
FokI	GGATG	1 cut(s)	111
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	24, 113, 141
FspBI	CTAG	1 cut(s)	450
GlaI	GCGC	2 cut(s)	280, 437
GluI	GCNGC	3 cut(s)	24, 113, 141
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	281, 438
Hin1II	CATG	5 cut(s)	92, 122, 152, 218, 341
Hin6I	GCGC	2 cut(s)	279, 436
HinP1I	GCGC	2 cut(s)	279, 436
HinfI	GANTC	2 cut(s)	236, 481
Hpy188III	TCNNGA	3 cut(s)	119, 134, 203
HpyAV	CCTTC	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	3 cut(s)	112, 140, 341
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 109, 338, 343
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	5 cut(s)	92, 122, 152, 218, 341
HspAI	GCGC	2 cut(s)	279, 436
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	152
LmnI	GCTCC	2 cut(s)	21, 97
LpnPI	CCDG	7 cut(s)	73, 81, 108, 298, 372, 384, 423
Lsp1109I	GCAGC	3 cut(s)	35, 124, 152
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	388
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	169, 439
MfeI	CAATTG	1 cut(s)	444
MhlI	GDGCHC	2 cut(s)	249, 394
MluCI	AATT	3 cut(s)	71, 178, 444
MnlI	CCTC	6 cut(s)	29, 126, 135, 220, 449, 495
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	2 cut(s)	419, 504
MspR9I	CCNGG	1 cut(s)	96
MunI	CAATTG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	54, 109, 338, 343
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	5 cut(s)	92, 122, 152, 218, 341
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	2 cut(s)	92, 341
PaeI	GCATGC	2 cut(s)	92, 341
PagI	TCATGA	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	236, 481
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	25, 114, 142
Ppu21I	YACGTR	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	419, 504
SatI	GCNGC	3 cut(s)	24, 113, 141
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	249, 394
SetI	ASST	7 cut(s)	28, 85, 201, 373, 391, 412, 418
SfaNI	GCATC	1 cut(s)	127
SmiI	ATTTAAAT	1 cut(s)	505
SmlI	CTYRAG	2 cut(s)	126, 393
SmoI	CTYRAG	2 cut(s)	126, 393
SphI	GCATGC	2 cut(s)	92, 341
Sse9I	AATT	3 cut(s)	71, 178, 444
SseBI	AGGCCT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	460
SwaI	ATTTAAAT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	391
TasI	AATT	3 cut(s)	71, 178, 444
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	236, 481
Tru1I	TTAA	2 cut(s)	419, 504
Tru9I	TTAA	2 cut(s)	419, 504
TseI	GCWGC	3 cut(s)	23, 112, 140
TspDTI	ATGAA	2 cut(s)	171, 228
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	2 cut(s)	92, 341
XspI	CTAG	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.