Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

30989864 .. 30990975

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTACCATAGCCAGCGGAACTCGCAATTCCTTTGTCGGCTCCAAGAACGCCTCAAAACCGAAGCCCTCGCCTGCTTGCCCGCACTCTGCACCATCTGGTGGGCATGCTCTAGGGTGGCAAGATGTCCTGCCTCAAGATTCTCAAGTTCAAGATGTCGCAAACCATGTTGTGAAGAGCCTTCAGCAAAATTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGTCAGTAGTGATCTCCTTCAATTTGTGATTGTGAGGGAGTTGGATTCTGGTATCAAACACATAGTAGACGATCTGATCACGACCAGGATTGTACTAGATAGGATGCTCAAGGATGCAGATGGTGGCATTAGTGATCATCTGCGCAACCACATTCATTTGACAAATTGCATTCACTTGAAGAACCATATGCACAAGCACAGCCACATATTGGCCAATAGGTCACGTATGAGGGACTTGGTTGTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

165

Amino Acids

18.14

Weight (kDa)

7.94

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	485
Acc16I	TGCGCA	1 cut(s)	389
AccB7I	CCANNNNNTGG	2 cut(s)	101, 454
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	18, 83
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	101, 238, 454
AgsI	TTSAA	4 cut(s)	152, 221, 266, 424
AjnI	CCWGG	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AoxI	GGCC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	458
BccI	CCATC	2 cut(s)	103, 359
BciT130I	CCWGG	1 cut(s)	331
BclI	TGATCA	2 cut(s)	321, 379
BfaI	CTAG	2 cut(s)	113, 341
Bme1390I	CCNGG	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	339, 349
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	3 cut(s)	120, 129, 338
BsaAI	YACGTR	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 238, 454
BseBI	CCWGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	354, 364
BseLI	CCNNNNNNNGG	3 cut(s)	101, 238, 454
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	458
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	101, 238, 454
BsmFI	GGGAC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	458
Bsp143I	GATC	4 cut(s)	256, 316, 321, 379
BspACI	CCGC	2 cut(s)	18, 83
BspANI	GGCC	1 cut(s)	458
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	170
BssMI	GATC	4 cut(s)	256, 316, 321, 379
Bst2UI	CCWGG	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	5 cut(s)	16, 75, 79, 83, 108
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	354, 364
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	4 cut(s)	259, 319, 324, 382
BstMBI	GATC	4 cut(s)	256, 316, 321, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 24
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	354, 364
Cac8I	GCNNGC	5 cut(s)	16, 75, 79, 83, 108
CfoI	GCGC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	3 cut(s)	107, 167, 233
CviJI	RGCY	8 cut(s)	5, 14, 42, 67, 180, 217, 447, 458
CviKI_1	RGCY	8 cut(s)	5, 14, 42, 67, 180, 217, 447, 458
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	4 cut(s)	258, 318, 323, 381
DpnII	GATC	4 cut(s)	256, 316, 321, 379
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	329
FaeI	CATG	3 cut(s)	110, 170, 236
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	3 cut(s)	106, 166, 232
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	432
FbaI	TGATCA	2 cut(s)	321, 379
FblI	GTMKAC	1 cut(s)	312
FokI	GGATG	2 cut(s)	361, 371
FspBI	CTAG	2 cut(s)	113, 341
FspI	TGCGCA	1 cut(s)	389
GlaI	GCGC	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	458
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	110, 170, 236
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HinfI	GANTC	2 cut(s)	140, 290
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	4 cut(s)	137, 152, 221, 325
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	191, 272
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	4 cut(s)	92, 362, 414, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 24
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	3 cut(s)	110, 170, 236
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	2 cut(s)	321, 379
Kzo9I	GATC	4 cut(s)	256, 316, 321, 379
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	7 cut(s)	28, 84, 87, 143, 279, 316, 343
LweI	GCATC	2 cut(s)	339, 349
MaeI	CTAG	2 cut(s)	113, 341
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	4 cut(s)	258, 318, 323, 381
MboI	GATC	4 cut(s)	256, 316, 321, 379
MboII	GAAGA	2 cut(s)	187, 436
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	5 cut(s)	28, 190, 196, 266, 409
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	6 cut(s)	64, 79, 144, 238, 273, 468
Mox20I	TGGCCA	1 cut(s)	458
MscI	TGGCCA	1 cut(s)	458
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	11, 24
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	4 cut(s)	256, 316, 321, 379
NlaIII	CATG	3 cut(s)	110, 170, 236
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	465
NsbI	TGCGCA	1 cut(s)	389
NspI	RCATGY	1 cut(s)	110
PaeI	GCATGC	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	170
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	140, 290
PflMI	CCANNNNNTGG	2 cut(s)	101, 454
Ppu21I	YACGTR	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	256, 316, 321, 379
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	4 cut(s)	219, 249, 467, 472
SfaNI	GCATC	2 cut(s)	339, 349
SmlI	CTYRAG	3 cut(s)	135, 144, 353
SmoI	CTYRAG	3 cut(s)	135, 144, 353
SphI	GCATGC	1 cut(s)	110
Sse9I	AATT	5 cut(s)	28, 190, 196, 266, 409
SsiI	CCGC	2 cut(s)	18, 83
SspMI	CTAG	2 cut(s)	113, 341
StyD4I	CCNGG	1 cut(s)	329
TaiI	ACGT	1 cut(s)	472
TasI	AATT	5 cut(s)	28, 190, 196, 266, 409
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	2 cut(s)	140, 290
TseFI	GTSAC	1 cut(s)	465
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	189, 389
Van91I	CCANNNNNTGG	2 cut(s)	101, 454
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	2 cut(s)	113, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.