Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

27377705 .. 27391569

Gene Structure 13865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG227800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTATTCAAATATATTTCCTTTTCGTTGCTCCGGTTGTTGCTTCAACCAGATTCGAAGCCTAAACGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGACTGTCCATGTTAAGGCAGAGGCTATGGATTCATTTGAGCCATATGGAAATGGAACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGATGCAACTGGAGAAACCAGGGCAGATGGAAAGGGGGCAGAGCATGCATTGCTACCCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCATGCTCAAGTAGATATTACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

135

Amino Acids

14.82

Weight (kDa)

5.91

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	101, 262
AfiI	CCNNNNNNNGG	2 cut(s)	68, 205
AgsI	TTSAA	5 cut(s)	10, 47, 119, 152, 188
AjnI	CCWGG	2 cut(s)	79, 305
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	101, 262
ApeKI	GCWGC	2 cut(s)	97, 125
AspLEI	GCGC	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	109, 137
BccI	CCATC	2 cut(s)	78, 308
BciT130I	CCWGG	2 cut(s)	81, 307
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	98, 126
BlsI	GCNGC	2 cut(s)	99, 127
Bme1390I	CCNGG	2 cut(s)	81, 307
BmrFI	CCNGG	2 cut(s)	81, 307
BmsI	GCATC	2 cut(s)	112, 280
BpmI	CTGGAG	2 cut(s)	63, 318
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	96, 373
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 205
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	2 cut(s)	335, 378
BseBI	CCWGG	2 cut(s)	81, 307
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	68, 205
BseMI	GCAATG	2 cut(s)	335, 378
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	109, 137
BsgI	GTGCAG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	68, 205
BsmAI	GTCTC	1 cut(s)	185
Bsp119I	TTCGAA	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	106, 254
BspHI	TCATGA	1 cut(s)	103
BspPI	GGATC	2 cut(s)	101, 262
BspQI	GCTCTTC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	56
BsrDI	GCAATG	2 cut(s)	335, 378
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	106, 254
Bst2UI	CCWGG	2 cut(s)	81, 307
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	137
BstAPI	GCANNNNNTGC	3 cut(s)	94, 332, 337
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	75, 333, 385
BstF5I	GGATG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	109, 257
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	106, 254
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 332, 337
BstNI	CCWGG	2 cut(s)	81, 307
BstNSI	RCATGY	3 cut(s)	77, 335, 387
BstSCI	CCNGG	2 cut(s)	79, 305
BstV1I	GCAGC	2 cut(s)	109, 137
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	3 cut(s)	75, 333, 385
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	275
CviAII	CATG	6 cut(s)	74, 104, 134, 200, 332, 384
CviJI	RGCY	7 cut(s)	61, 100, 128, 147, 184, 215, 232
CviKI_1	RGCY	7 cut(s)	61, 100, 128, 147, 184, 215, 232
DpnI	GATC	2 cut(s)	108, 256
DpnII	GATC	2 cut(s)	106, 254
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	79, 305
EcoT22I	ATGCAT	1 cut(s)	337
FaeI	CATG	6 cut(s)	77, 107, 137, 203, 335, 387
FatI	CATG	6 cut(s)	73, 103, 133, 199, 331, 383
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	98, 126
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	98, 126
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	2 cut(s)	98, 126
GsuI	CTGGAG	2 cut(s)	63, 318
HapII	CCGG	1 cut(s)	34
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	6 cut(s)	77, 107, 137, 203, 335, 387
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	2 cut(s)	53, 221
HpaII	CCGG	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	104, 119, 188
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	97, 125, 293, 335, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 332, 337
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	6 cut(s)	77, 107, 137, 203, 335, 387
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	106, 254
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	2 cut(s)	36, 82
LpnPI	CCDG	9 cut(s)	47, 63, 66, 93, 282, 292, 319, 367, 379
Lsp1109I	GCAGC	2 cut(s)	109, 137
LweI	GCATC	2 cut(s)	112, 280
MaeII	ACGT	1 cut(s)	67
MalI	GATC	2 cut(s)	108, 256
MboI	GATC	2 cut(s)	106, 254
MboII	GAAGA	1 cut(s)	154
MluCI	AATT	1 cut(s)	163
MnlI	CCTC	3 cut(s)	111, 120, 205
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	81, 307
MvaI	CCWGG	2 cut(s)	81, 307
MwoI	GCNNNNNNNGC	3 cut(s)	94, 332, 337
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	2 cut(s)	106, 254
NlaIII	CATG	6 cut(s)	77, 107, 137, 203, 335, 387
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	3 cut(s)	77, 335, 387
NspV	TTCGAA	1 cut(s)	56
PaeI	GCATGC	3 cut(s)	77, 335, 387
PagI	TCATGA	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	53, 221
PfoI	TCCNGGA	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	99, 127
Psp6I	CCWGG	2 cut(s)	79, 305
PspGI	CCWGG	2 cut(s)	79, 305
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	98, 126
Sau3AI	GATC	2 cut(s)	106, 254
ScrFI	CCNGG	2 cut(s)	81, 307
SetI	ASST	3 cut(s)	70, 186, 407
SfaNI	GCATC	2 cut(s)	112, 280
SfuI	TTCGAA	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	111, 388
SmoI	CTYRAG	2 cut(s)	111, 388
SphI	GCATGC	3 cut(s)	77, 335, 387
Sse9I	AATT	1 cut(s)	163
StyD4I	CCNGG	2 cut(s)	79, 305
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	53, 221
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	97, 125
TspDTI	ATGAA	2 cut(s)	156, 213
XceI	RCATGY	3 cut(s)	77, 335, 387
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.