Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

31684729 .. 31706664

Gene Structure 21936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTATAAAAGGAGGACTTACTAAAAATGGTGGAGGTTGGAAGACAAAAATATATGTGAGATGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAATGACGCAAATGGAGAAACCAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCTACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCGCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

157

Amino Acids

17.04

Weight (kDa)

6.2

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	98, 250
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	116, 149, 185
AjnI	CCWGG	2 cut(s)	76, 293
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	98, 250
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	94, 122
AspLEI	GCGC	2 cut(s)	263, 420
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	106, 134
BccI	CCATC	2 cut(s)	75, 296
BciT130I	CCWGG	2 cut(s)	78, 295
BfaI	CTAG	1 cut(s)	431
BisI	GCNGC	2 cut(s)	95, 123
BlsI	GCNGC	2 cut(s)	96, 124
Bme1390I	CCNGG	2 cut(s)	78, 295
BmrFI	CCNGG	2 cut(s)	78, 295
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	93, 360
BsaJI	CCNNGG	2 cut(s)	294, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse3DI	GCAATG	2 cut(s)	323, 365
BseBI	CCWGG	2 cut(s)	78, 295
BseDI	CCNNGG	2 cut(s)	294, 441
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	323, 365
BseXI	GCAGC	2 cut(s)	106, 134
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	202
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	231, 376
Bsp143I	GATC	2 cut(s)	103, 242
BspANI	GGCC	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	100
BspPI	GGATC	2 cut(s)	98, 250
BspQI	GCTCTTC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	323, 365
BssECI	CCNNGG	2 cut(s)	294, 441
BssMI	GATC	2 cut(s)	103, 242
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	2 cut(s)	78, 295
Bst6I	CTCTTC	1 cut(s)	134
BstAPI	GCANNNNNTGC	3 cut(s)	91, 320, 325
BstC8I	GCNNGC	3 cut(s)	72, 321, 372
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	263, 420
BstKTI	GATC	2 cut(s)	106, 245
BstMBI	GATC	2 cut(s)	103, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 320, 325
BstNI	CCWGG	2 cut(s)	78, 295
BstNSI	RCATGY	2 cut(s)	74, 323
BstSCI	CCNGG	2 cut(s)	76, 293
BstV1I	GCAGC	2 cut(s)	106, 134
BstV2I	GAAGAC	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	86
Cac8I	GCNNGC	3 cut(s)	72, 321, 372
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	2 cut(s)	263, 420
CseI	GACGC	1 cut(s)	287
CviAII	CATG	5 cut(s)	71, 101, 131, 197, 320
CviJI	RGCY	7 cut(s)	97, 125, 144, 181, 212, 229, 440
CviKI_1	RGCY	7 cut(s)	97, 125, 144, 181, 212, 229, 440
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	105, 244
DpnII	GATC	2 cut(s)	103, 242
DraI	TTTAAA	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	76, 293
EcoT14I	CCWWGG	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	5 cut(s)	74, 104, 134, 200, 323
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	5 cut(s)	70, 100, 130, 196, 319
Fnu4HI	GCNGC	2 cut(s)	95, 123
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	95, 123
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	2 cut(s)	262, 419
GluI	GCNGC	2 cut(s)	95, 123
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	440
HgaI	GACGC	1 cut(s)	287
HhaI	GCGC	2 cut(s)	263, 420
Hin1II	CATG	5 cut(s)	74, 104, 134, 200, 323
Hin6I	GCGC	2 cut(s)	261, 418
HinP1I	GCGC	2 cut(s)	261, 418
HinfI	GANTC	2 cut(s)	218, 462
Hpy188III	TCNNGA	3 cut(s)	101, 116, 185
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	94, 122, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 320, 325
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	74, 104, 134, 200, 323
HspAI	GCGC	2 cut(s)	261, 418
Kzo9I	GATC	2 cut(s)	103, 242
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	63, 90, 280, 307, 354, 366, 405
Lsp1109I	GCAGC	2 cut(s)	106, 134
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	431
MalI	GATC	2 cut(s)	105, 244
MboI	GATC	2 cut(s)	103, 242
MboII	GAAGA	4 cut(s)	55, 151, 418, 421
MfeI	CAATTG	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	231, 376
MluCI	AATT	2 cut(s)	160, 425
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	6 cut(s)	8, 29, 108, 117, 202, 430
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	78, 295
MunI	CAATTG	1 cut(s)	425
MvaI	CCWGG	2 cut(s)	78, 295
MwoI	GCNNNNNNNGC	3 cut(s)	91, 320, 325
NdeII	GATC	2 cut(s)	103, 242
NlaIII	CATG	5 cut(s)	74, 104, 134, 200, 323
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	2 cut(s)	74, 323
PaeI	GCATGC	2 cut(s)	74, 323
PagI	TCATGA	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	218, 462
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	96, 124
Psp6I	CCWGG	2 cut(s)	76, 293
PspGI	CCWGG	2 cut(s)	76, 293
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	2 cut(s)	95, 123
Sau3AI	GATC	2 cut(s)	103, 242
ScrFI	CCNGG	2 cut(s)	78, 295
SduI	GDGCHC	2 cut(s)	231, 376
SetI	ASST	4 cut(s)	40, 183, 394, 400
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	108, 375
SmoI	CTYRAG	2 cut(s)	108, 375
SphI	GCATGC	2 cut(s)	74, 323
Sse9I	AATT	2 cut(s)	160, 425
SseBI	AGGCCT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	431
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	76, 293
StyI	CCWWGG	1 cut(s)	441
TasI	AATT	2 cut(s)	160, 425
TfiI	GAWTC	2 cut(s)	218, 462
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TseI	GCWGC	2 cut(s)	94, 122
TspDTI	ATGAA	2 cut(s)	153, 210
XceI	RCATGY	2 cut(s)	74, 323
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.