Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

7505451 .. 7506411

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTGAGGACATATCTGTTGTTTGTCCTTAGCATTTTCAATGTTCTCTCTTCTCTCGTGGGTGTATTTCTAAGCAGCACAAAGAGGAATCAAGTTATGGGACTGAATTGGGTTTTGATCAGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGTCGTAGTGATTTCCTTCAATGTGTTTTTTTTTTTGCTTATCTATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

105

Amino Acids

11.95

Weight (kDa)

6.96

Isoelectric Point (pI)

38.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	46 - 98	4.8e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	40, 173, 206, 242, 286
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
AlwI	GGATC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	75, 151, 179
BauI	CACGAG	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	87, 163, 191
BccI	CCATC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	135
BclI	TGATCA	1 cut(s)	117
BisI	GCNGC	3 cut(s)	76, 152, 180
BlsI	GCNGC	3 cut(s)	77, 153, 181
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	2 cut(s)	29, 258
BpuEI	CTTGAG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	87, 163, 191
BsgI	GTGCAG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	117, 160
BspHI	TCATGA	1 cut(s)	157
BspPI	GGATC	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	191
BssMI	GATC	2 cut(s)	117, 160
BssSI	CACGAG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	135
Bst6I	CTCTTC	2 cut(s)	55, 191
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	29, 71, 258
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	120, 163
BstMBI	GATC	2 cut(s)	117, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	133
BstV1I	GCAGC	3 cut(s)	87, 163, 191
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	129
CciI	TCATGA	1 cut(s)	157
CviAII	CATG	4 cut(s)	128, 158, 188, 254
CviJI	RGCY	4 cut(s)	154, 182, 201, 238
CviKI_1	RGCY	4 cut(s)	154, 182, 201, 238
DdeI	CTNAG	3 cut(s)	29, 71, 258
DpnI	GATC	2 cut(s)	119, 162
DpnII	GATC	2 cut(s)	117, 160
Eam1104I	CTCTTC	2 cut(s)	55, 191
EarI	CTCTTC	2 cut(s)	55, 191
EcoRII	CCWGG	1 cut(s)	133
FaeI	CATG	4 cut(s)	131, 161, 191, 257
FaiI	YATR	7 cut(s)	13, 98, 129, 159, 189, 234, 255
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	4 cut(s)	127, 157, 187, 253
FbaI	TGATCA	1 cut(s)	117
Fnu4HI	GCNGC	3 cut(s)	76, 152, 180
FokI	GGATG	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	76, 152, 180
GluI	GCNGC	3 cut(s)	76, 152, 180
GsuI	CTGGAG	1 cut(s)	117
Hin1II	CATG	4 cut(s)	131, 161, 191, 257
HinfI	GANTC	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	158, 173, 242
HpyAV	CCTTC	2 cut(s)	212, 292
HpyCH4V	TGCA	2 cut(s)	151, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	3 cut(s)	29, 71, 258
Hsp92II	CATG	4 cut(s)	131, 161, 191, 257
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	117, 160
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	120, 147
Lsp1109I	GCAGC	3 cut(s)	87, 163, 191
LweI	GCATC	1 cut(s)	166
MalI	GATC	2 cut(s)	119, 162
MboI	GATC	2 cut(s)	117, 160
MboII	GAAGA	2 cut(s)	42, 208
MluCI	AATT	2 cut(s)	106, 217
MnlI	CCTC	4 cut(s)	78, 165, 174, 259
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	2 cut(s)	117, 160
NlaIII	CATG	4 cut(s)	131, 161, 191, 257
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	77, 153, 181
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	3 cut(s)	76, 152, 180
Sau3AI	GATC	2 cut(s)	117, 160
ScrFI	CCNGG	1 cut(s)	135
SetI	ASST	2 cut(s)	240, 270
SfaNI	GCATC	1 cut(s)	166
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	2 cut(s)	106, 217
StyD4I	CCNGG	1 cut(s)	133
TasI	AATT	2 cut(s)	106, 217
TfiI	GAWTC	1 cut(s)	88
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	75, 151, 179
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.