Rw6G015610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000575
Physical Location & Seq
Reverse (-)
30112400 .. 30114338
1939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015610.1

Sequence Viewer

Length: 672 bp
ATGGACGAGACGATGATGTACGAGAACGTGTGGGTGGACGAGGTGTCAGCGTACGACTCATTTTCTTTTAATGTGCCCAATCCAGAAAAGATCGACAGGGATGCTTGGAGTACACAGCTGGTTCCGGAATTTGCTAAGCTTGGCTTAGTATGCACATGGTGGAATGAGCATGAAATGGGATGCACAATCGATCCAAAAATAGACATTCCACGCCCGGATGTCTTTCTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGGCAAAGTTGGCATTGAAAGTACTGTCGGGCGAAGAGTGGTTAATCACTAGAGACTTTGAAGACGAGGATCTAGTGCGTGAACGGTTCAAGACTTTTATTTCCAAATATGAAAAATTCATGAAGGAGGTTGGTCAGCGGTTCCCCTGTGAACTTAAACCTAATGAACATTCTATCGCTTTTGTGGCAAATGCACGAATATTTGAAATTATGGCGGTTCTCGTGTGGCAAGTAGTTGTGCACGGTAATTTGGATGTTGAACAAGAGCTCTATAGTTTGTTGGAGTTTTATGAGAGGCCTTCCGGATTTGAACATAATCCATGCACTGATTCGTGGCCTGGATATGATGATATGATGGAACCTAGCAAATCACTGAATGATCAAATAGGCGAACTACAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

26.02

Weight (kDa)

4.44

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 124, 569
AciI CCGC 2 cut(s) 406, 482
AclWI GGATC 2 cut(s) 185, 345
AcsI RAATTY 2 cut(s) 128, 383
AdeI CACNNNGTG 1 cut(s) 159
AfaI GTAC 4 cut(s) 20, 53, 112, 291
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 6 cut(s) 286, 329, 358, 473, 527, 578
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 3 cut(s) 118, 139, 535
AluI AGCT 3 cut(s) 118, 139, 535
Alw21I GWGCWC 2 cut(s) 510, 537
Alw26I GTCTC 2 cut(s) 2, 315
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 2 cut(s) 185, 345
Aor13HI TCCGGA 2 cut(s) 124, 569
AoxI GGCC 2 cut(s) 563, 602
ApaLI GTGCAC 1 cut(s) 506
ApoI RAATTY 2 cut(s) 128, 383
AsuC2I CCSGG 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 78, 510
BanII GRGCYC 2 cut(s) 235, 537
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 510, 537
BccI CCATC 1 cut(s) 616
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 606
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 2, 315
BfaI CTAG 3 cut(s) 318, 341, 630
BfmI CTRYAG 2 cut(s) 538, 662
BlpI GCTNAGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 215, 606
BmeRI GACNNNNNGTC 1 cut(s) 43
BmiI GGNNCC 3 cut(s) 123, 410, 627
BmrFI CCNGG 2 cut(s) 215, 606
BmsI GCATC 3 cut(s) 91, 170, 229
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 189
BsaWI WCCGGW 2 cut(s) 124, 569
BseAI TCCGGA 2 cut(s) 124, 569
BseBI CCWGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 189
BseGI GGATG 5 cut(s) 106, 185, 223, 244, 526
BseMII CTCAG 2 cut(s) 218, 248
BseSI GKGCMC 2 cut(s) 78, 510
BshFI GGCC 2 cut(s) 565, 604
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 510, 537
BsiSI CCGG 3 cut(s) 125, 215, 570
BsiWI CGTACG 1 cut(s) 51
BsmAI GTCTC 2 cut(s) 2, 315
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 2 cut(s) 565, 604
Bsp1286I GDGCHC 4 cut(s) 78, 235, 510, 537
Bsp13I TCCGGA 2 cut(s) 124, 569
Bsp143I GATC 4 cut(s) 90, 190, 337, 646
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 2 cut(s) 406, 482
BspANI GGCC 2 cut(s) 565, 604
BspCNI CTCAG 2 cut(s) 219, 247
BspDI ATCGAT 1 cut(s) 189
BspEI TCCGGA 2 cut(s) 124, 569
BspHI TCATGA 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 123, 410, 627
BspPI GGATC 2 cut(s) 185, 345
BssMI GATC 4 cut(s) 90, 190, 337, 646
BssSI CACGAG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 3 cut(s) 294, 354, 512
Bst6I CTCTTC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 135, 145, 227, 234
BstF5I GGATG 5 cut(s) 106, 185, 223, 244, 526
BstKTI GATC 4 cut(s) 93, 193, 340, 649
BstMAI GTCTC 2 cut(s) 2, 315
BstMBI GATC 4 cut(s) 90, 190, 337, 646
BstMWI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 452
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 2 cut(s) 213, 604
BstSFI CTRYAG 2 cut(s) 538, 662
BstSLI GKGCMC 2 cut(s) 78, 510
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 189
BsuRI GGCC 2 cut(s) 565, 604
BsuTUI ATCGAT 1 cut(s) 189
BtsCI GGATG 5 cut(s) 106, 185, 223, 244, 526
BtsIMutI CAGTG 2 cut(s) 591, 638
CciI TCATGA 1 cut(s) 387
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 4 cut(s) 19, 52, 111, 290
CviAII CATG 4 cut(s) 156, 170, 388, 588
CviJI RGCY 7 cut(s) 118, 139, 144, 233, 535, 565, 604
CviKI_1 RGCY 7 cut(s) 118, 139, 144, 233, 535, 565, 604
CviQI GTAC 4 cut(s) 19, 52, 111, 290
DdeI CTNAG 4 cut(s) 135, 145, 227, 234
DpnI GATC 4 cut(s) 92, 192, 339, 648
DpnII GATC 4 cut(s) 90, 190, 337, 646
DraIII CACNNNGTG 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 535
Eco147I AGGCCT 1 cut(s) 565
Eco24I GRGCYC 2 cut(s) 235, 537
Eco53kI GAGCTC 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 604
EcoT38I GRGCYC 2 cut(s) 235, 537
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 159, 173, 391, 591
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 4 cut(s) 155, 169, 387, 587
FbaI TGATCA 1 cut(s) 646
FokI GGATG 5 cut(s) 113, 192, 230, 251, 533
FriOI GRGCYC 2 cut(s) 235, 537
FspBI CTAG 3 cut(s) 318, 341, 630
HaeIII GGCC 2 cut(s) 565, 604
HapII CCGG 3 cut(s) 125, 215, 570
Hin1II CATG 4 cut(s) 159, 173, 391, 591
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 56, 596
HpaII CCGG 3 cut(s) 125, 215, 570
Hpy166II GTNNAC 5 cut(s) 37, 113, 350, 419, 508
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 6 cut(s) 83, 125, 236, 358, 388, 570
Hpy8I GTNNAC 5 cut(s) 37, 113, 350, 419, 508
HpyAV CCTTC 2 cut(s) 385, 576
HpyCH4III ACNGT 3 cut(s) 294, 354, 512
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 153, 183, 461, 508, 591
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 452
HpyF3I CTNAG 4 cut(s) 135, 145, 227, 234
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 159, 173, 391, 591
Kpn2I TCCGGA 2 cut(s) 124, 569
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 90, 190, 337, 646
LweI GCATC 3 cut(s) 91, 170, 229
MaeI CTAG 3 cut(s) 318, 341, 630
MaeII ACGT 1 cut(s) 27
MalI GATC 4 cut(s) 92, 192, 339, 648
MboI GATC 4 cut(s) 90, 190, 337, 646
MboII GAAGA 2 cut(s) 314, 341
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 4 cut(s) 78, 235, 510, 537
MluCI AATT 4 cut(s) 128, 383, 474, 514
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 5 cut(s) 34, 222, 328, 388, 555
MroI TCCGGA 2 cut(s) 124, 569
MseI TTAA 3 cut(s) 69, 311, 423
MspA1I CMGCKG 2 cut(s) 118, 406
MspI CCGG 3 cut(s) 125, 215, 570
MspR9I CCNGG 2 cut(s) 215, 606
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 452
NciI CCSGG 1 cut(s) 215
NdeII GATC 4 cut(s) 90, 190, 337, 646
NlaIII CATG 4 cut(s) 159, 173, 391, 591
NlaIV GGNNCC 3 cut(s) 123, 410, 627
NmeAIII GCCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 387
PceI AGGCCT 1 cut(s) 565
PfeI GAWTC 1 cut(s) 596
Pfl23II CGTACG 1 cut(s) 51
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 123, 410, 627
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 4 cut(s) 20, 53, 112, 291
RsaNI GTAC 4 cut(s) 19, 52, 111, 290
SacI GAGCTC 1 cut(s) 537
SaqAI TTAA 3 cut(s) 69, 311, 423
Sau3AI GATC 4 cut(s) 90, 190, 337, 646
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 215, 606
SduI GDGCHC 4 cut(s) 78, 235, 510, 537
SetI ASST 8 cut(s) 30, 45, 120, 141, 399, 430, 537, 631
SfaNI GCATC 3 cut(s) 91, 170, 229
SfcI CTRYAG 2 cut(s) 538, 662
Sse9I AATT 4 cut(s) 128, 383, 474, 514
SseBI AGGCCT 1 cut(s) 565
SsiI CCGC 2 cut(s) 406, 482
SspI AATATT 1 cut(s) 468
SspMI CTAG 3 cut(s) 318, 341, 630
SstI GAGCTC 1 cut(s) 537
StuI AGGCCT 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 213, 604
TaaI ACNGT 3 cut(s) 294, 354, 512
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 93, 189
TasI AATT 4 cut(s) 128, 383, 474, 514
TatI WGTACW 2 cut(s) 110, 289
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 3 cut(s) 69, 311, 423
Tru9I TTAA 3 cut(s) 69, 311, 423
TscAI CASTG 2 cut(s) 598, 645
TspDTI ATGAA 6 cut(s) 186, 244, 376, 393, 404, 447
TspRI CASTG 2 cut(s) 598, 645
VneI GTGCAC 1 cut(s) 506
XapI RAATTY 2 cut(s) 128, 383
XspI CTAG 3 cut(s) 318, 341, 630
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.