RchiOBHm_Chr4g0389741

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000575
Physical Location & Seq
Forward (+)
4716543 .. 4721370
4828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36286

Sequence Viewer

Length: 261 bp
ATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAAATGGGGCAGAGAATGCATTGCCACCCCCACCCCATGTTATCCCTCCAGATGTTGTTCCATTGCATGCTCCGACAGATATTACACCTGAACCTTTTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

86

Amino Acids

9.12

Weight (kDa)

5.51

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 196
AspLEI GCGC 2 cut(s) 50, 177
BanII GRGCYC 1 cut(s) 18
BfaI CTAG 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 199
Bse3DI GCAATG 2 cut(s) 92, 134
Bse8I GATNNNNATC 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 244
BseMI GCAATG 2 cut(s) 92, 134
BshFI GGCC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 29
BspANI GGCC 1 cut(s) 198
BspPI GGATC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 92, 134
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 141
BstHHI GCGC 2 cut(s) 50, 177
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 143
BsuRI GGCC 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 141
CfoI GCGC 2 cut(s) 50, 177
CseI GACGC 1 cut(s) 74
CviAII CATG 2 cut(s) 110, 140
CviJI RGCY 2 cut(s) 16, 198
CviKI_1 RGCY 2 cut(s) 16, 198
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
DraI TTTAAA 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 113, 143
FaiI YATR 3 cut(s) 21, 111, 141
FatI CATG 2 cut(s) 109, 139
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 1 cut(s) 189
GlaI GCGC 2 cut(s) 49, 176
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 198
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 50, 177
Hin1II CATG 2 cut(s) 113, 143
Hin6I GCGC 2 cut(s) 48, 175
HinP1I GCGC 2 cut(s) 48, 175
HinfI GANTC 2 cut(s) 5, 220
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 92, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 113, 143
HspAI GCGC 2 cut(s) 48, 175
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 2 cut(s) 135, 174
MaeI CTAG 1 cut(s) 189
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 3 cut(s) 129, 188, 234
Mph1103I ATGCAT 1 cut(s) 94
MseI TTAA 1 cut(s) 243
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 29
NlaIII CATG 2 cut(s) 113, 143
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 1 cut(s) 143
PaeI GCATGC 1 cut(s) 143
PceI AGGCCT 1 cut(s) 198
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 5, 220
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 18
SetI ASST 2 cut(s) 163, 169
SgeI CNNG 7 cut(s) 122, 134, 152, 173, 201, 206, 212
SmiI ATTTAAAT 1 cut(s) 244
SphI GCATGC 1 cut(s) 143
Sse9I AATT 1 cut(s) 183
SseBI AGGCCT 1 cut(s) 198
SspMI CTAG 1 cut(s) 189
StuI AGGCCT 1 cut(s) 198
StyI CCWWGG 1 cut(s) 199
SwaI ATTTAAAT 1 cut(s) 244
TasI AATT 1 cut(s) 183
TfiI GAWTC 2 cut(s) 5, 220
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
XceI RCATGY 1 cut(s) 143
XspI CTAG 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.