RchiOBHm_Chr6g0274891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000575
Physical Location & Seq
Reverse (-)
36479617 .. 36481758
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24663

Sequence Viewer

Length: 297 bp
ATGGGCGTGCAGATGAAGGTGGTTGGTCAGCGGTTCCCCTGTGAAATTAAACATAATGAACATTGTATTGCTATTGTGGCAAATGCACAAATATATAGAATGATGGCGGGTCTCGTGTGGGAAGTAGTTATGTTCGATAATTATGATGTTCAACAAGAGCTCGAAAGTATGTTGGAGTTTTATGAGGGGCTTTCCGGATTTGAACATAATCCATACACTGATTCGGGGCCTGGACATGATGATATGATGGAACCAAGCAAATCACTAAATGATCAAATAGGCGAACTACAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

4.42

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 2 cut(s) 31, 107
AgsI TTSAA 2 cut(s) 152, 203
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 116
Aor13HI TCCGGA 1 cut(s) 194
AoxI GGCC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 162
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 162
BccI CCATC 2 cut(s) 97, 241
BciT130I CCWGG 1 cut(s) 231
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 3 cut(s) 35, 228, 252
BmrFI CCNGG 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 194
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 116
BsnI GGCC 1 cut(s) 229
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 2 cut(s) 31, 107
BspANI GGCC 1 cut(s) 229
BspEI TCCGGA 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 35, 228, 252
BspTNI GGTCTC 1 cut(s) 116
BssMI GATC 1 cut(s) 271
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 227
CviAII CATG 1 cut(s) 236
CviJI RGCY 3 cut(s) 160, 190, 229
CviKI_1 RGCY 3 cut(s) 160, 190, 229
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 162
FaeI CATG 1 cut(s) 239
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 271
FriOI GRGCYC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 195
Hin1II CATG 1 cut(s) 239
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 10, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 239
Kpn2I TCCGGA 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 52, 208, 216, 243
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 2 cut(s) 45, 139
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 178
MroI TCCGGA 1 cut(s) 194
MseI TTAA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 271
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 3 cut(s) 35, 228, 252
PfeI GAWTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 35, 228, 252
PspPI GGNCC 1 cut(s) 227
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 162
SetI ASST 2 cut(s) 21, 162
SfcI CTRYAG 1 cut(s) 287
Sse9I AATT 2 cut(s) 45, 139
SsiI CCGC 2 cut(s) 31, 107
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 229
TaqI TCGA 2 cut(s) 135, 162
TasI AATT 2 cut(s) 45, 139
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 29, 72
TspRI CASTG 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.