Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

21035049 .. 21051179

Gene Structure 16131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCTATCTGGCTTCATCAAGAAGGCCAGTGAGCTTGTCTACTGTTCAAACTGATGTCATCATCATCTCCACGGAGGTAGTCAAGGTGCTTAATATGATCAAGCTTTACGGAAAGATAATTCGTGTAAATAAGGGGAGGCAAATCTTCATGATGGGAGAATCCCTCAGAAAGGGAAATAATGGTTTTATAGGAACACACGGTGGGCATGCTCCAGGATGGCAAGATGTGCAACCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAGGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGTCGATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

119

Amino Acids

13.24

Weight (kDa)

9.4

Isoelectric Point (pI)

42.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	172, 340
AgsI	TTSAA	3 cut(s)	50, 254, 323
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	36, 106, 319
AluI	AGCT	3 cut(s)	36, 106, 319
AlwI	GGATC	1 cut(s)	236
AoxI	GGCC	2 cut(s)	3, 26
ApeKI	GCWGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	2 cut(s)	148, 213
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	247
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 340
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	172, 340
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	2 cut(s)	5, 28
BslI	CCNNNNNNNGG	2 cut(s)	172, 340
BsnI	GGCC	2 cut(s)	5, 28
Bsp143I	GATC	3 cut(s)	99, 241, 352
BspANI	GGCC	2 cut(s)	5, 28
BspCNI	CTCAG	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	150, 238
BspPI	GGATC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	99, 241, 352
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	2 cut(s)	46, 203
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	167, 339
BstDSI	CCRYGG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	3 cut(s)	102, 244, 355
BstMBI	GATC	3 cut(s)	99, 241, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 229, 269
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	5, 28
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	210
CciI	TCATGA	2 cut(s)	150, 238
Cfr13I	GGNCC	1 cut(s)	294
CviAII	CATG	5 cut(s)	151, 209, 239, 269, 335
CviJI	RGCY	8 cut(s)	5, 14, 28, 36, 106, 263, 282, 319
CviKI_1	RGCY	8 cut(s)	5, 14, 28, 36, 106, 263, 282, 319
DdeI	CTNAG	2 cut(s)	167, 339
DpnI	GATC	3 cut(s)	101, 243, 354
DpnII	GATC	3 cut(s)	99, 241, 352
DraIII	CACNNNGTG	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	269
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	5 cut(s)	154, 212, 242, 272, 338
FaiI	YATR	8 cut(s)	98, 152, 191, 210, 240, 270, 315, 336
FatI	CATG	5 cut(s)	150, 208, 238, 268, 334
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	5, 28
Hin1II	CATG	5 cut(s)	154, 212, 242, 272, 338
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	5 cut(s)	21, 151, 239, 254, 323
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	2 cut(s)	18, 293
HpyCH4III	ACNGT	2 cut(s)	46, 203
HpyCH4V	TGCA	2 cut(s)	232, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 229, 269
HpyF3I	CTNAG	2 cut(s)	167, 339
Hsp92II	CATG	5 cut(s)	154, 212, 242, 272, 338
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	99, 241, 352
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	42, 201, 228
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	1 cut(s)	247
MalI	GATC	3 cut(s)	101, 243, 354
MboI	GATC	3 cut(s)	99, 241, 352
MboII	GAAGA	2 cut(s)	139, 289
MluCI	AATT	2 cut(s)	120, 298
MnlI	CCTC	6 cut(s)	70, 132, 176, 246, 255, 340
MseI	TTAA	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	3 cut(s)	11, 229, 269
NdeII	GATC	3 cut(s)	99, 241, 352
NlaIII	CATG	5 cut(s)	154, 212, 242, 272, 338
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PagI	TCATGA	2 cut(s)	150, 238
PciSI	GCTCTTC	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	3 cut(s)	99, 241, 352
Sau96I	GGNCC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	8 cut(s)	38, 81, 90, 108, 238, 296, 321, 351
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	2 cut(s)	120, 298
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	46, 203
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	120, 298
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	6, 139, 291
TspGWI	ACGGA	2 cut(s)	89, 126
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	170
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.