Rroxscaffold_1G00032590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000575
Physical Location & Seq
Forward (+)
46751942 .. 46753567
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032590.1

Sequence Viewer

Length: 507 bp
ATGCAAGGAGGATATGGGGATGATCAAGAAGAGGAGGAGATCACGAAAATGGGAAGGATCGGCCCATGCATCGGCGACGTCGAGGTTTTTCGGTCGGGTCGGGTTTCGCACGTCCGGGGTGCCTTCGATCCAGCTCTCGTGGGCGGCGGCGGGCAAGGAAAAGACACAGGCAACCGGGCGGCTCGGCCCAGTGCGGGGAGGGCCGGATCCATGGCGGAGGAGGCCGAGGAGGAATCTACGGCCGGGTCGGGTCAACGAAAACCCACCGGGTCCGAGGGAAAACAAAGAGAATCGGGGGAAATTTTCGGGGGCTTTTCTGCAAAGCTGAGTTGTTGCTTCTGTAGAAATGATCTAGGTGGTGGAAGTGAGGTTGAAACATTAGGACCTGTCTCCTTAAGCAAGGTTTTTCTTCCATGCTCAAACCTTAAGGTTGTGAGTAGAGCATTACAGAGCAAGGATGATCTAGCTAGCATGTTTTATTTGAAAACCAGTTTAATTATACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

17.57

Weight (kDa)

5.32

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 6 cut(s) 144, 147, 150, 179, 194, 215
AclWI GGATC 4 cut(s) 65, 122, 201, 214
AcoI YGGCCR 1 cut(s) 240
AcsI RAATTY 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 71, 194, 195
AflII CTTAAG 2 cut(s) 394, 425
AgsI TTSAA 2 cut(s) 374, 484
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 3 cut(s) 134, 325, 467
AluI AGCT 3 cut(s) 134, 325, 467
Alw26I GTCTC 1 cut(s) 394
AlwI GGATC 4 cut(s) 65, 122, 201, 214
AoxI GGCC 5 cut(s) 61, 185, 201, 222, 240
ApoI RAATTY 1 cut(s) 300
AspS9I GGNCC 5 cut(s) 62, 186, 201, 270, 383
AsuC2I CCSGG 4 cut(s) 116, 176, 244, 268
AsuNHI GCTAGC 1 cut(s) 467
AvaII GGWCC 2 cut(s) 270, 383
BamHI GGATCC 1 cut(s) 206
BanI GGYRCC 1 cut(s) 119
BauI CACGAG 1 cut(s) 137
BceAI ACGGC 1 cut(s) 255
BclI TGATCA 1 cut(s) 22
BcnI CCSGG 4 cut(s) 116, 176, 244, 268
BcoDI GTCTC 1 cut(s) 394
BfaI CTAG 3 cut(s) 353, 464, 468
BfmI CTRYAG 1 cut(s) 340
BfrI CTTAAG 2 cut(s) 394, 425
BisI GCNGC 3 cut(s) 145, 148, 180
BlsI GCNGC 3 cut(s) 146, 149, 181
Bme1390I CCNGG 4 cut(s) 116, 176, 244, 268
Bme18I GGWCC 2 cut(s) 270, 383
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 5 cut(s) 62, 186, 201, 270, 383
BmiI GGNNCC 3 cut(s) 121, 208, 271
BmrFI CCNGG 4 cut(s) 116, 176, 244, 268
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 78
BmtI GCTAGC 1 cut(s) 471
BmuI ACTGGG 1 cut(s) 183
BpuMI CCSGG 4 cut(s) 116, 176, 244, 268
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 115, 210, 225, 273
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 194, 195
Bse1I ACTGG 2 cut(s) 189, 489
BseDI CCNNGG 4 cut(s) 115, 210, 225, 273
BseGI GGATG 2 cut(s) 25, 463
BseLI CCNNNNNNNGG 3 cut(s) 71, 194, 195
BseMII CTCAG 1 cut(s) 317
BseNI ACTGG 2 cut(s) 189, 489
BseRI GAGGAG 4 cut(s) 47, 50, 233, 242
BseX3I CGGCCG 1 cut(s) 240
Bsh1285I CGRYCG 2 cut(s) 95, 243
BshFI GGCC 5 cut(s) 63, 187, 203, 224, 242
BshNI GGYRCC 1 cut(s) 119
BsiEI CGRYCG 2 cut(s) 95, 243
BsiSI CCGG 5 cut(s) 115, 175, 204, 243, 267
BslI CCNNNNNNNGG 3 cut(s) 71, 194, 195
BsmAI GTCTC 1 cut(s) 394
BsnI GGCC 5 cut(s) 63, 187, 203, 224, 242
Bsp143I GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 6 cut(s) 144, 147, 150, 179, 194, 215
BspANI GGCC 5 cut(s) 63, 187, 203, 224, 242
BspCNI CTCAG 1 cut(s) 318
BspLI GGNNCC 3 cut(s) 121, 208, 271
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 4 cut(s) 65, 122, 201, 214
BspT107I GGYRCC 1 cut(s) 119
BspTI CTTAAG 2 cut(s) 394, 425
BsrI ACTGG 2 cut(s) 189, 489
BssECI CCNNGG 4 cut(s) 115, 210, 225, 273
BssMI GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 78
BstAFI CTTAAG 2 cut(s) 394, 425
BstC8I GCNNGC 2 cut(s) 152, 469
BstDEI CTNAG 1 cut(s) 326
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 25, 463
BstKTI GATC 7 cut(s) 25, 42, 60, 130, 209, 352, 463
BstMAI GTCTC 1 cut(s) 394
BstMBI GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
BstMCI CGRYCG 2 cut(s) 95, 243
BstMWI GCNNNNNNNGC 2 cut(s) 200, 221
BstNSI RCATGY 1 cut(s) 475
BstSCI CCNGG 4 cut(s) 114, 174, 242, 266
BstSFI CTRYAG 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 206
BstYI RGATCY 1 cut(s) 206
BstZI CGGCCG 1 cut(s) 240
BsuRI GGCC 5 cut(s) 63, 187, 203, 224, 242
BtgI CCRYGG 1 cut(s) 210
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 25, 463
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 152, 469
Cfr13I GGNCC 5 cut(s) 62, 186, 201, 270, 383
CviAII CATG 4 cut(s) 66, 211, 414, 472
DdeI CTNAG 1 cut(s) 326
DpnI GATC 7 cut(s) 24, 41, 59, 129, 208, 351, 462
DpnII GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 230
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 270, 383
Eco52I CGGCCG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 4 cut(s) 69, 214, 417, 475
FaiI YATR 7 cut(s) 15, 67, 212, 415, 473, 500, 505
FatI CATG 4 cut(s) 65, 210, 413, 471
FauI CCCGC 2 cut(s) 143, 187
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 145, 148, 180
FokI GGATG 2 cut(s) 32, 470
Fsp4HI GCNGC 3 cut(s) 145, 148, 180
FspBI CTAG 3 cut(s) 353, 464, 468
GluI GCNGC 3 cut(s) 145, 148, 180
HaeIII GGCC 5 cut(s) 63, 187, 203, 224, 242
HapII CCGG 5 cut(s) 115, 175, 204, 243, 267
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 4 cut(s) 69, 214, 417, 475
HincII GTYRAC 1 cut(s) 254
HindII GTYRAC 1 cut(s) 254
HinfI GANTC 2 cut(s) 233, 290
HpaII CCGG 5 cut(s) 115, 175, 204, 243, 267
Hpy166II GTNNAC 1 cut(s) 254
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 26, 43
Hpy8I GTNNAC 1 cut(s) 254
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 2 cut(s) 48, 133
HpyCH4IV ACGT 2 cut(s) 78, 111
HpyCH4V TGCA 3 cut(s) 4, 69, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 221
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 2 cut(s) 78, 111
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 4 cut(s) 69, 214, 417, 475
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
LweI GCATC 1 cut(s) 78
MaeI CTAG 3 cut(s) 353, 464, 468
MaeII ACGT 2 cut(s) 78, 111
MalI GATC 7 cut(s) 24, 41, 59, 129, 208, 351, 462
MboI GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
MboII GAAGA 2 cut(s) 41, 401
MflI RGATCY 1 cut(s) 206
MluCI AATT 2 cut(s) 300, 495
Mph1103I ATGCAT 1 cut(s) 71
MseI TTAA 3 cut(s) 395, 426, 494
MslI CAYNNNNRTG 1 cut(s) 47
MspCI CTTAAG 2 cut(s) 394, 425
MspI CCGG 5 cut(s) 115, 175, 204, 243, 267
MspR9I CCNGG 4 cut(s) 116, 176, 244, 268
MwoI GCNNNNNNNGC 2 cut(s) 200, 221
NciI CCSGG 4 cut(s) 116, 176, 244, 268
NcoI CCATGG 1 cut(s) 210
NdeII GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 4 cut(s) 69, 214, 417, 475
NlaIV GGNNCC 3 cut(s) 121, 208, 271
NmeAIII GCCGAG 2 cut(s) 163, 250
NsiI ATGCAT 1 cut(s) 71
NspI RCATGY 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PfeI GAWTC 2 cut(s) 233, 290
PkrI GCNGC 3 cut(s) 146, 149, 181
PpuMI RGGWCCY 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 383
PspN4I GGNNCC 3 cut(s) 121, 208, 271
PspPI GGNCC 5 cut(s) 62, 186, 201, 270, 383
PspPPI RGGWCCY 1 cut(s) 383
PsuI RGATCY 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 395, 426, 494
SatI GCNGC 3 cut(s) 145, 148, 180
Sau3AI GATC 7 cut(s) 22, 39, 57, 127, 206, 349, 460
Sau96I GGNCC 5 cut(s) 62, 186, 201, 270, 383
ScrFI CCNGG 4 cut(s) 116, 176, 244, 268
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 2 cut(s) 270, 383
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 394, 425
SmoI CTYRAG 2 cut(s) 394, 425
Sse9I AATT 2 cut(s) 300, 495
SsiI CCGC 6 cut(s) 144, 147, 150, 179, 194, 215
SspMI CTAG 3 cut(s) 353, 464, 468
StyD4I CCNGG 4 cut(s) 114, 174, 242, 266
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 2 cut(s) 81, 114
TaqI TCGA 2 cut(s) 81, 126
TaqII GACCGA 1 cut(s) 81
TasI AATT 2 cut(s) 300, 495
TauI GCSGC 3 cut(s) 147, 150, 182
TfiI GAWTC 2 cut(s) 233, 290
Tru1I TTAA 3 cut(s) 395, 426, 494
Tru9I TTAA 3 cut(s) 395, 426, 494
TscAI CASTG 1 cut(s) 196
TspRI CASTG 1 cut(s) 196
Vha464I CTTAAG 2 cut(s) 394, 425
VpaK11BI GGWCC 2 cut(s) 270, 383
XapI RAATTY 1 cut(s) 300
XceI RCATGY 1 cut(s) 475
XspI CTAG 3 cut(s) 353, 464, 468
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.