Rh6BG295700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000575
Physical Location & Seq
Forward (+)
52456341 .. 52469625
13285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG295700.1

Sequence Viewer

Length: 255 bp
ATGGAGCAGCTTGACTTCGAGCGTGGCGTCTGTGTGCCGTTTCGCAAAGCAACATCTGGAACTGGTTCACTTCTGTTCAAATTTGAAAGTGGGTTGGTTTTGGGCTCTTCATGGTTTGATGCAACATCTCTCTGTTCTCAGGTTGCTTCTGTAGAAAATGATTCAGGTGGTGGAAGTGAGGTTGAGACATCAGGACCTACTTCTTCATTAGTCTTCGAGAACGACTGCTCTAAACCCAAAGCTTTCCATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.9

Weight (kDa)

4.57

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 27
AgsI TTSAA 2 cut(s) 79, 86
AluBI AGCT 2 cut(s) 10, 242
AluI AGCT 2 cut(s) 10, 242
Alw26I GTCTC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 150
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 205
BsaHI GRCGYC 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 151
BspQI GCTCTTC 1 cut(s) 112
BsrI ACTGG 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 19
BstV2I GAAGAC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 16
CviAII CATG 1 cut(s) 111
CviJI RGCY 3 cut(s) 10, 105, 242
CviKI_1 RGCY 3 cut(s) 10, 105, 242
DdeI CTNAG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 1 cut(s) 114
FaiI YATR 1 cut(s) 112
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 1 cut(s) 8
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 8
HgaI GACGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 57, 192, 217
Hpy8I GTNNAC 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 1 cut(s) 114
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 42, 48, 125, 150, 177
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 99, 195, 205
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 80
MnlI CCTC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 64
NlaIII CATG 1 cut(s) 114
PciSI GCTCTTC 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 194
PspPI GGNCC 1 cut(s) 194
PspPPI RGGWCCY 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 112
SatI GCNGC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 12, 144, 169, 183, 199, 244
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 194
Sse9I AATT 1 cut(s) 80
TaqI TCGA 2 cut(s) 18, 216
TasI AATT 1 cut(s) 80
TfiI GAWTC 1 cut(s) 161
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 99, 195
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.