Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

9930228 .. 9933037

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0060100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTTGAGAAATCCGGCCACCGTCGCCACGTTATTGCTCGCTCTGCTATTGATTTCCGACCCCAATTTTGCGTCCGCCGCTACGGGTGGGCGGTCCGGCGGAAGCCTGTTCCCCTCCGGCGGAGATTCTTCTTCTTCTTCATCTTCATCTTCATCTTCGTCTTCATCGTGGTCGGGGTCTTCGGGTTCATCGGACTCTTGGTCGTGGCACCACTCGCCGTCGTCGTCTTCCTTGTCGGACGGTGGATTCTACGTCTTCTTGGTTTTAATGGCGGCTGTGGTTGGTGTGGCGGTCATCTGCCGCTGTGCTGGTGTTGGGAAAACAAGCGTCGTCAAGCTTCAGGTTGGTCTGGTGGGCAAGGCGCGATCACTTCAAAAGGATCTTAATCGACTTACTGAAACTACAGATATGTCTACGTCTACGGGTTTGAGCCATCTTTTGACAGGGGCATCAACATCTTTGCTTCGCAATCTTGATTATTGCATCTCAAGTTATTCATCTGTTACTCGAAAGTCCGAGACAGAAGATGCAGAGCAATGCTTCAAACAACTCTCTATGGAAGAAGCAGCTAAATTTGATGAAGTGACACTCGCCAATGTGAACAACTTTATAGTGCATTCAACAAGCCAGTCACCAAATGAAGGCCACAAAGAATATATAGTGGTTACAATTTTGGTGGCTACTGAAGGAGCACCTAAGTTGCCTAGCATCAATGGCCCAGGTGACTTGAAGAAAGCATTACAGAGTCTTGGATCCATTCCCTCGAACAAAATACTGGCGGTTGAGGTCTTGTGGACTCCTCAACAAGAAAATGATACATTGACTGAGAAGGAACTACTTAAAGATTACCCGCAGTTGAGGGGCTTTTATGATGAAGGGTCACTTGAAGAAGGGCCATATGACGATTCCCACCCGTTCTTAGGGGTTACTGTCGTCAAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

315

Amino Acids

33.23

Weight (kDa)

5.17

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1517	PF07466	109 - 288	3.6e-61	Protein of unknown function (DUF1517)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	2 cut(s)	416, 422
AccII	CGCG	1 cut(s)	367
AclWI	GGATC	3 cut(s)	390, 750, 763
AcoI	YGGCCR	1 cut(s)	18
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	2 cut(s)	326, 708
AfiI	CCNNNNNNNGG	3 cut(s)	122, 644, 923
AgsI	TTSAA	5 cut(s)	377, 547, 624, 733, 890
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	3 cut(s)	340, 572, 945
AluI	AGCT	3 cut(s)	340, 572, 945
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	515
AlwI	GGATC	3 cut(s)	390, 750, 763
AoxI	GGCC	4 cut(s)	18, 646, 718, 896
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	575
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	3 cut(s)	96, 719, 896
AsuHPI	GGTGA	2 cut(s)	627, 737
AvaII	GGWCC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	755
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	4 cut(s)	156, 174, 222, 250
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	1 cut(s)	444
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	2 cut(s)	708, 946
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	4 cut(s)	81, 276, 304, 570
BlsI	GCNGC	4 cut(s)	82, 277, 305, 571
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	1 cut(s)	96
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	96, 719, 896
BmiI	GGNNCC	2 cut(s)	212, 757
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	4 cut(s)	461, 495, 520, 720
BpiI	GAAGAC	4 cut(s)	156, 174, 222, 250
BpuEI	CTTGAG	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 644, 923
Bse1I	ACTGG	2 cut(s)	631, 783
Bse3DI	GCAATG	1 cut(s)	545
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	1 cut(s)	721
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	122, 644, 923
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	2 cut(s)	631, 783
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	367
BshFI	GGCC	4 cut(s)	20, 648, 720, 898
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	3 cut(s)	17, 99, 120
BslI	CCNNNNNNNGG	3 cut(s)	122, 644, 923
BsmAI	GTCTC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	4 cut(s)	20, 648, 720, 898
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	368, 382, 755
BspANI	GGCC	4 cut(s)	20, 648, 720, 898
BspCNI	CTCAG	1 cut(s)	820
BspFNI	CGCG	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	212, 757
BspPI	GGATC	3 cut(s)	390, 750, 763
BspT107I	GGYRCC	1 cut(s)	210
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	631, 783
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	3 cut(s)	368, 382, 755
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	3 cut(s)	25, 245, 934
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	699, 828, 922
BstFNI	CGCG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	3 cut(s)	371, 385, 758
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	3 cut(s)	368, 382, 755
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 46, 80, 217, 717
BstNI	CCWGG	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	721
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	4 cut(s)	156, 174, 222, 250
BstX2I	RGATCY	2 cut(s)	382, 755
BstYI	RGATCY	2 cut(s)	382, 755
BsuRI	GGCC	4 cut(s)	20, 648, 720, 898
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	1 cut(s)	367
Cfr13I	GGNCC	3 cut(s)	96, 719, 896
CpoI	CGGWCCG	1 cut(s)	96
CseI	GACGC	2 cut(s)	63, 319
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CspI	CGGWCCG	1 cut(s)	96
DdeI	CTNAG	3 cut(s)	699, 828, 922
DpnI	GATC	3 cut(s)	370, 384, 757
DpnII	GATC	3 cut(s)	368, 382, 755
DriI	GACNNNNNGTC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	18
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EciI	GGCGGA	3 cut(s)	67, 117, 138
Eco47I	GGWCC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	326, 708
EcoRII	CCWGG	1 cut(s)	721
FaiI	YATR	8 cut(s)	413, 560, 614, 660, 662, 873, 901, 903
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FauI	CCCGC	1 cut(s)	861
FauNDI	CATATG	1 cut(s)	901
FblI	GTMKAC	2 cut(s)	416, 422
Fnu4HI	GCNGC	4 cut(s)	81, 276, 304, 570
Fsp4HI	GCNGC	4 cut(s)	81, 276, 304, 570
FspBI	CTAG	2 cut(s)	708, 946
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	4 cut(s)	81, 276, 304, 570
HaeIII	GGCC	4 cut(s)	20, 648, 720, 898
HapII	CCGG	3 cut(s)	17, 99, 120
HgaI	GACGC	2 cut(s)	63, 319
HhaI	GCGC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	6 cut(s)	128, 197, 249, 748, 799, 908
HpaII	CCGG	3 cut(s)	17, 99, 120
HphI	GGTGA	2 cut(s)	627, 737
Hpy166II	GTNNAC	4 cut(s)	417, 423, 604, 798
Hpy188I	TCNGA	4 cut(s)	61, 196, 241, 520
Hpy188III	TCNNGA	2 cut(s)	476, 940
Hpy8I	GTNNAC	4 cut(s)	417, 423, 604, 798
Hpy99I	CGWCG	4 cut(s)	29, 226, 229, 335
HpyAV	CCTTC	5 cut(s)	638, 683, 826, 872, 887
HpyCH4III	ACNGT	3 cut(s)	25, 245, 934
HpyCH4IV	ACGT	3 cut(s)	32, 255, 419
HpyCH4V	TGCA	3 cut(s)	486, 533, 619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 46, 80, 217, 717
HpyF3I	CTNAG	3 cut(s)	699, 828, 922
HpySE526I	ACGT	3 cut(s)	32, 255, 419
HspAI	GCGC	1 cut(s)	365
Kzo9I	GATC	3 cut(s)	368, 382, 755
LmnI	GCTCC	1 cut(s)	692
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	4 cut(s)	461, 495, 520, 720
MaeI	CTAG	2 cut(s)	708, 946
MaeII	ACGT	3 cut(s)	32, 255, 419
MaeIII	GTNAC	7 cut(s)	505, 586, 633, 667, 725, 882, 928
MalI	GATC	3 cut(s)	370, 384, 757
MboI	GATC	3 cut(s)	368, 382, 755
MflI	RGATCY	2 cut(s)	382, 755
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	3 cut(s)	67, 575, 672
MlyI	GAGTC	3 cut(s)	191, 757, 793
MmeI	TCCRAC	2 cut(s)	84, 219
MnlI	CCTC	5 cut(s)	127, 775, 781, 813, 855
MseI	TTAA	3 cut(s)	269, 387, 843
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	3 cut(s)	17, 99, 120
MspR9I	CCNGG	1 cut(s)	723
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	723
MvnI	CGCG	1 cut(s)	367
MwoI	GCNNNNNNNGC	5 cut(s)	26, 46, 80, 217, 717
NdeI	CATATG	1 cut(s)	901
NdeII	GATC	3 cut(s)	368, 382, 755
NlaIV	GGNNCC	2 cut(s)	212, 757
NmuCI	GTSAC	4 cut(s)	586, 633, 725, 882
PcsI	WCGNNNNNNNCGW	2 cut(s)	167, 224
PctI	GAATGC	1 cut(s)	619
PfeI	GAWTC	3 cut(s)	128, 249, 908
PkrI	GCNGC	4 cut(s)	82, 277, 305, 571
PleI	GAGTC	3 cut(s)	191, 756, 793
PpsI	GAGTC	3 cut(s)	191, 756, 793
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	2 cut(s)	212, 757
PspPI	GGNCC	3 cut(s)	96, 719, 896
PsuI	RGATCY	2 cut(s)	382, 755
Rsr2I	CGGWCCG	1 cut(s)	96
RsrII	CGGWCCG	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	269, 387, 843
SatI	GCNGC	4 cut(s)	81, 276, 304, 570
Sau3AI	GATC	3 cut(s)	368, 382, 755
Sau96I	GGNCC	3 cut(s)	96, 719, 896
SchI	GAGTC	3 cut(s)	191, 757, 793
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	4 cut(s)	461, 495, 520, 720
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	3 cut(s)	67, 575, 672
SspMI	CTAG	2 cut(s)	708, 946
StyD4I	CCNGG	1 cut(s)	721
TaaI	ACNGT	3 cut(s)	25, 245, 934
TaiI	ACGT	3 cut(s)	35, 258, 422
TaqI	TCGA	3 cut(s)	391, 511, 767
TasI	AATT	3 cut(s)	67, 575, 672
TauI	GCSGC	3 cut(s)	83, 278, 306
TfiI	GAWTC	3 cut(s)	128, 249, 908
Tru1I	TTAA	3 cut(s)	269, 387, 843
Tru9I	TTAA	3 cut(s)	269, 387, 843
TseFI	GTSAC	4 cut(s)	586, 633, 725, 882
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	4 cut(s)	586, 633, 725, 882
TspDTI	ATGAA	9 cut(s)	132, 138, 144, 156, 180, 489, 597, 657, 891
VpaK11BI	GGWCC	1 cut(s)	96
XapI	RAATTY	1 cut(s)	575
XmiI	GTMKAC	2 cut(s)	416, 422
XspI	CTAG	2 cut(s)	708, 946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.