Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

11458145 .. 11459411

Gene Structure 1267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG074200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGACTTGTAGACTGGTGAAAGTGGGTCAAAGTCCCAATTTCATTTGGAAAAAGAGTGGGCATGCTCCAGGGTGGCAAGATGTACAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTTTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCTCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGTGATAGAAGATCATGCCGAGTTCAACATGCTTCATAAGCTGAAGAGGGGAGACAAAGAAGAGAAATATAAAGTTGAAGTGCACAAGAACGATGAAGGTGCCTACAATCTGAATCAGATGGAGGCACAGCACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

112

Amino Acids

12.89

Weight (kDa)

6.43

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	24 - 71	4.1e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	2 cut(s)	122, 263
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	5 cut(s)	107, 130, 176, 226, 278
AjnI	CCWGG	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	172, 241
AluI	AGCT	2 cut(s)	172, 241
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	246
Alw44I	GTGCAC	1 cut(s)	281
AlwI	GGATC	1 cut(s)	89
ApaLI	GTGCAC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	28, 214
BaeGI	GKGCMC	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	246
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	125
BshNI	GGYRCC	1 cut(s)	299
BsiHKAI	GWGCWC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	94, 211
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	89
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	299
BsrGI	TGTACA	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	94, 211
Bst2UI	CCWGG	1 cut(s)	69
Bst6I	CTCTTC	3 cut(s)	125, 239, 255
BstAUI	TGTACA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	97, 214
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	94, 211
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 238
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	2 cut(s)	65, 232
BstSCI	CCNGG	1 cut(s)	67
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	63
CciI	TCATGA	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	6 cut(s)	62, 92, 122, 188, 215, 229
CviJI	RGCY	5 cut(s)	88, 116, 135, 172, 241
CviKI_1	RGCY	5 cut(s)	88, 116, 135, 172, 241
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	2 cut(s)	96, 213
DpnII	GATC	2 cut(s)	94, 211
Eam1104I	CTCTTC	3 cut(s)	125, 239, 255
EarI	CTCTTC	3 cut(s)	125, 239, 255
Eco57I	CTGAAG	2 cut(s)	122, 263
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	6 cut(s)	65, 95, 125, 191, 218, 232
FaiI	YATR	9 cut(s)	63, 93, 123, 168, 189, 216, 230, 237, 270
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	61, 91, 121, 187, 214, 228
FblI	GTMKAC	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	51
Hin1II	CATG	6 cut(s)	65, 95, 125, 191, 218, 232
HinfI	GANTC	1 cut(s)	313
HphI	GGTGA	2 cut(s)	28, 214
Hpy166II	GTNNAC	2 cut(s)	11, 283
Hpy188I	TCNGA	2 cut(s)	312, 318
Hpy188III	TCNNGA	3 cut(s)	92, 107, 176
Hpy8I	GTNNAC	2 cut(s)	11, 283
HpyAV	CCTTC	2 cut(s)	146, 290
HpyCH4V	TGCA	2 cut(s)	113, 283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 238
HpyF3I	CTNAG	1 cut(s)	192
Hsp92II	CATG	6 cut(s)	65, 95, 125, 191, 218, 232
Kzo9I	GATC	2 cut(s)	94, 211
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	2 cut(s)	54, 81
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	100
MalI	GATC	2 cut(s)	96, 213
MboI	GATC	2 cut(s)	94, 211
MboII	GAAGA	4 cut(s)	142, 221, 256, 272
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	37, 151
MnlI	CCTC	5 cut(s)	99, 108, 193, 240, 316
MseI	TTAA	1 cut(s)	337
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	122, 238
NdeII	GATC	2 cut(s)	94, 211
NlaIII	CATG	6 cut(s)	65, 95, 125, 191, 218, 232
NlaIV	GGNNCC	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	244
NspI	RCATGY	2 cut(s)	65, 232
PaeI	GCATGC	1 cut(s)	65
PagI	TCATGA	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	301
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	337
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	94, 211
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	174, 204, 243, 301
SfaNI	GCATC	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	37, 151
StyD4I	CCNGG	1 cut(s)	67
TasI	AATT	2 cut(s)	37, 151
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	337
Tru9I	TTAA	1 cut(s)	337
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	31, 144, 224, 309
VneI	GTGCAC	1 cut(s)	281
XceI	RCATGY	2 cut(s)	65, 232
XmiI	GTMKAC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.