Rw1G006050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000575
Physical Location & Seq
Reverse (-)
12301030 .. 12302516
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006050.1

Sequence Viewer

Length: 459 bp
ATGGCATTAGCTACATTTAGCTTACTTTATATCGTTTTTTGGCTCTACAAGAATGCTTCTCCGGAAAAATCAAAAGATGGAAAAGATGCTGAAACTGCAGAAGCTGGACCCTCCTCGAGCAAGGATGCTTCTTCCAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGGAGCTGGACGAGCAAGACCACCACCACCGGCAGCCTTCGCCGTTGCCAGAGGACTTCGACATCACAGACCACCTCGCCCAAAGACGGTAGAGCCACGTGATCATCCTTGTCCGCCGGTCTACAACCACCAAATTCCAGATCAGCGCCTCCTCCGCCATATGTCGTCGCTGCATAGCAACGCCACAAATCCGATCAAAGCAAGTAGCAGACCATTAGAACCGGCCAACCGACCATTCTCTTCTCGTGTCAACCCAGTCATCAGGATTGCCCGAGACCCCAAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.56

Weight (kDa)

10.19

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 2 cut(s) 284, 325
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 153
AcvI CACGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 4 cut(s) 11, 21, 104, 176
AluI AGCT 4 cut(s) 11, 21, 104, 176
Alw26I GTCTC 1 cut(s) 438
AlwNI CAGNNNCTG 2 cut(s) 104, 176
Ama87I CYCGRG 2 cut(s) 115, 441
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 203, 340
ApoI RAATTY 1 cut(s) 303
AspLEI GCGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 107
AvaI CYCGRG 2 cut(s) 115, 441
AvaII GGWCC 1 cut(s) 107
BauI CACGAG 1 cut(s) 414
BbrPI CACGTG 1 cut(s) 269
BbvI GCAGC 2 cut(s) 215, 327
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 197
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 319
BisI GCNGC 2 cut(s) 204, 341
BlsI GCNGC 2 cut(s) 205, 342
Bme18I GGWCC 1 cut(s) 107
BmeT110I CYCGRG 2 cut(s) 115, 441
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 76, 115
BmuI ACTGGG 1 cut(s) 419
BsaAI YACGTR 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 3 cut(s) 199, 286, 391
Bse1I ACTGG 1 cut(s) 425
BseAI TCCGGA 1 cut(s) 61
BseGI GGATG 2 cut(s) 130, 274
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 2 cut(s) 103, 311
BseXI GCAGC 2 cut(s) 215, 327
BshFI GGCC 1 cut(s) 395
BsiHKCI CYCGRG 2 cut(s) 115, 441
BsiSI CCGG 4 cut(s) 62, 200, 287, 392
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 438
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 438
BsoBI CYCGRG 2 cut(s) 115, 441
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 3 cut(s) 271, 310, 363
BspACI CCGC 2 cut(s) 284, 325
BspANI GGCC 1 cut(s) 395
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 438
BsrFI RCCGGY 3 cut(s) 199, 286, 391
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 3 cut(s) 199, 286, 391
BssMI GATC 3 cut(s) 271, 310, 363
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 415
BstBAI YACGTR 1 cut(s) 269
BstF5I GGATG 2 cut(s) 130, 274
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 3 cut(s) 274, 313, 366
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 3 cut(s) 271, 310, 363
BstMWI GCNNNNNNNGC 4 cut(s) 95, 182, 209, 324
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 215, 327
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 130, 274
CaiI CAGNNNCTG 2 cut(s) 104, 176
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 3 cut(s) 199, 286, 391
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 167
CviJI RGCY 9 cut(s) 11, 21, 43, 104, 176, 206, 265, 395, 456
CviKI_1 RGCY 9 cut(s) 11, 21, 43, 104, 176, 206, 265, 395, 456
DpnI GATC 3 cut(s) 273, 312, 365
DpnII GATC 3 cut(s) 271, 310, 363
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 1 cut(s) 415
EarI CTCTTC 1 cut(s) 415
EciI GGCGGA 2 cut(s) 273, 314
Eco31I GGTCTC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 153
Eco72I CACGTG 1 cut(s) 269
Eco88I CYCGRG 2 cut(s) 115, 441
FaiI YATR 4 cut(s) 30, 330, 332, 345
FauNDI CATATG 1 cut(s) 330
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 204, 341
FokI GGATG 2 cut(s) 137, 261
Fsp4HI GCNGC 2 cut(s) 204, 341
GlaI GCGC 1 cut(s) 317
GluI GCNGC 2 cut(s) 204, 341
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 1 cut(s) 395
HapII CCGG 4 cut(s) 62, 200, 287, 392
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 318
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HpaII CCGG 4 cut(s) 62, 200, 287, 392
Hpy166II GTNNAC 2 cut(s) 292, 421
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 4 cut(s) 62, 171, 308, 433
Hpy8I GTNNAC 2 cut(s) 292, 421
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 98, 343
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 182, 209, 324
HpySE526I ACGT 1 cut(s) 268
HspAI GCGC 1 cut(s) 316
Kpn2I TCCGGA 1 cut(s) 61
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 3 cut(s) 271, 310, 363
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 215, 327
LweI GCATC 2 cut(s) 76, 115
MaeII ACGT 1 cut(s) 268
MalI GATC 3 cut(s) 273, 312, 365
MboI GATC 3 cut(s) 271, 310, 363
MboII GAAGA 2 cut(s) 123, 402
MluCI AATT 1 cut(s) 303
MnlI CCTC 6 cut(s) 121, 124, 215, 255, 329, 332
MroI TCCGGA 1 cut(s) 61
MspI CCGG 4 cut(s) 62, 200, 287, 392
Mva1269I GAATGC 1 cut(s) 58
MwoI GCNNNNNNNGC 4 cut(s) 95, 182, 209, 324
NdeI CATATG 1 cut(s) 330
NdeII GATC 3 cut(s) 271, 310, 363
NlaIV GGNNCC 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 115
PctI GAATGC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 205, 342
PmaCI CACGTG 1 cut(s) 269
PmlI CACGTG 1 cut(s) 269
Ppu21I YACGTR 1 cut(s) 269
PspCI CACGTG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 107
PspXI VCTCGAGB 1 cut(s) 115
PstI CTGCAG 1 cut(s) 100
PstNI CAGNNNCTG 2 cut(s) 104, 176
SatI GCNGC 2 cut(s) 204, 341
Sau3AI GATC 3 cut(s) 271, 310, 363
Sau96I GGNCC 1 cut(s) 107
SetI ASST 7 cut(s) 13, 23, 106, 149, 178, 247, 271
SfaNI GCATC 2 cut(s) 76, 115
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 303
SsiI CCGC 2 cut(s) 284, 325
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 116, 229
TasI AATT 1 cut(s) 303
TseI GCWGC 2 cut(s) 203, 340
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.