Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

2494465 .. 2495471

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g03010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGCTTCAAAGAAGTGCAGGAGTTTAAGCAGGCTGATGACGAGGAGACGCCGTTGATTACCTCTGCCGATCTTGGCACCAAGCAAGGTGGGCATCCTCCTGGGTGGCAATCTGTGCCGCCGCATGACCCGCAGGTGCAGGATGCGGCTAACCACGCTGTTAAGTCCCTCCAGCAGAAGTCTAATTCCTTGTTGCCTTATGAGCTTCAAGAAGTTGTTCACGCCAAGGCTGAGGTGATAGAAGAGCTTGCAAAGTTTAACATGCTTCTGAAGGTGAAAAGGGGAAGCAAAGAAGAGAAGTTTAAAGCCGAAGTGCACAAGAATATGGAAGGCGCCTTCAGTCTGAATCATATGGAGGCAGACCACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

124

Amino Acids

13.74

Weight (kDa)

5.6

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	35 - 102	3.7e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	2 cut(s)	77, 332
AciI	CCGC	4 cut(s)	119, 122, 131, 146
AcuI	CTGAAG	2 cut(s)	290, 322
AcyI	GRCGYC	2 cut(s)	50, 333
AgsI	TTSAA	2 cut(s)	10, 209
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	205, 247
AluI	AGCT	2 cut(s)	205, 247
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	41
Alw44I	GTGCAC	1 cut(s)	314
ApaLI	GTGCAC	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	247, 286
BaeGI	GKGCMC	1 cut(s)	318
BanI	GGYRCC	2 cut(s)	77, 332
Bbv12I	GWGCWC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	119, 122, 147
BlsI	GCNGC	3 cut(s)	120, 123, 148
Bme1390I	CCNGG	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	79, 334
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	2 cut(s)	103, 133
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	231
BsaHI	GRCGYC	2 cut(s)	50, 333
BsaJI	CCNNGG	2 cut(s)	101, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	101, 225
BseGI	GGATG	2 cut(s)	94, 148
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	318
BsgI	GTGCAG	2 cut(s)	38, 158
BshNI	GGYRCC	2 cut(s)	77, 332
BsiHKAI	GWGCWC	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	4 cut(s)	119, 122, 131, 146
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	79, 334
BspMI	ACCTGC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	2 cut(s)	77, 332
BssECI	CCNNGG	2 cut(s)	101, 225
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	2 cut(s)	50, 333
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	237, 288
BstACI	GRCGYC	2 cut(s)	50, 333
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	33, 249
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	94, 148
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 115, 130, 155, 202
BstNI	CCWGG	1 cut(s)	102
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	94, 148
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	33, 249
CfoI	GCGC	1 cut(s)	335
CseI	GACGC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	2 cut(s)	125, 262
CviJI	RGCY	7 cut(s)	6, 35, 149, 205, 230, 247, 308
CviKI_1	RGCY	7 cut(s)	6, 35, 149, 205, 230, 247, 308
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DraI	TTTAAA	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	237, 288
EarI	CTCTTC	2 cut(s)	237, 288
Eco130I	CCWWGG	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	290, 322
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	225
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	2 cut(s)	128, 265
FaiI	YATR	6 cut(s)	126, 201, 263, 326, 351, 353
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	124, 261
FauI	CCCGC	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	119, 122, 147
FokI	GGATG	2 cut(s)	81, 155
Fsp4HI	GCNGC	3 cut(s)	119, 122, 147
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	119, 122, 147
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	336
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	2 cut(s)	50, 333
Hin1II	CATG	2 cut(s)	128, 265
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	2 cut(s)	247, 286
Hpy166II	GTNNAC	2 cut(s)	220, 316
Hpy188I	TCNGA	2 cut(s)	270, 345
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	220, 316
HpyAV	CCTTC	3 cut(s)	265, 323, 346
HpyCH4V	TGCA	4 cut(s)	19, 139, 251, 316
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 115, 130, 155, 202
HpyF3I	CTNAG	1 cut(s)	231
Hsp92I	GRCGYC	2 cut(s)	50, 333
Hsp92II	CATG	2 cut(s)	128, 265
HspAI	GCGC	1 cut(s)	333
KasI	GGCGCC	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	70
LguI	GCTCTTC	1 cut(s)	237
LpnPI	CCDG	7 cut(s)	5, 17, 87, 114, 119, 125, 185
LweI	GCATC	2 cut(s)	103, 133
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	254, 305
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	184
Mly113I	GGCGCC	1 cut(s)	333
MnlI	CCTC	6 cut(s)	37, 73, 108, 179, 226, 349
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	4 cut(s)	27, 162, 258, 303
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	5 cut(s)	91, 115, 130, 155, 202
NarI	GGCGCC	1 cut(s)	333
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	128, 265
NlaIV	GGNNCC	2 cut(s)	79, 334
NspI	RCATGY	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	3 cut(s)	120, 123, 148
PluTI	GGCGCC	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	79, 334
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	4 cut(s)	27, 162, 258, 303
SatI	GCNGC	3 cut(s)	119, 122, 147
Sau3AI	GATC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	7 cut(s)	65, 91, 138, 207, 237, 249, 276
SfaNI	GCATC	2 cut(s)	103, 133
SfoI	GGCGCC	1 cut(s)	334
Sse9I	AATT	1 cut(s)	184
SsiI	CCGC	4 cut(s)	119, 122, 131, 146
SspDI	GGCGCC	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	225
TasI	AATT	1 cut(s)	184
TauI	GCSGC	3 cut(s)	121, 124, 149
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	4 cut(s)	27, 162, 258, 303
Tru9I	TTAA	4 cut(s)	27, 162, 258, 303
VneI	GTGCAC	1 cut(s)	314
XceI	RCATGY	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.