RchiOBHm_Chr6g0271691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000575
Physical Location & Seq
Forward (+)
31581359 .. 31583499
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24369

Sequence Viewer

Length: 693 bp
ATGGACGAGACGATGATGTACGAGAACGTGTGGGTGGACGAGGTGTCAGCGTACGACTCATTTTCTTTTAATGTGCCCAATCCAGAAAAGATCGACAGGGATGCTTGGAGTACACAGCTGGTTCCGGAATTTGCTAAGCTTGGCTTAGTATGCACATGGTGGAATGAGCATGAAATGGGATGCACAATCGATCCAAAAATAGACATTCCACGCCCGGATGTCTTTCTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGGCAAAGTTGGCATTGAAAGTACTGTCGGGCGATGAGTGGTTAATCACTAGAGACTTTGAAGACGAGATTAGTCTGGATCCAGTGCGTGAACGGTTCGAGACTTTTATTTCCAAATATGAAAAATTCATGAAGGATGTTGGTCAGCGGTTCCCCTGTGAACTTAAACCTAATGTACCTAATGAACATTCTATCGCTTTTGTGGCAAATGCACGAATATTTGAAATTCTGGCGGTTCTCGTGTGGCAAGTAGTTGTGCACGGTAATTTGGATGTTGAACAAGAGCTCCATAGTTTGTTGGAGTTTTATGAGAGGCCTTCCGGATTTGAACATAATCCATGCACTGATTCGGGGCCTGGATATGATGATATGATGGAACCTAGCAAATCACTGAATGATCAAATAGGCGAACTACAGATATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.53

Weight (kDa)

4.4

Isoelectric Point (pI)

29.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 124, 587
AciI CCGC 2 cut(s) 415, 500
AclWI GGATC 3 cut(s) 185, 341, 354
AcsI RAATTY 3 cut(s) 128, 392, 492
AdeI CACNNNGTG 1 cut(s) 159
AfaI GTAC 5 cut(s) 20, 53, 112, 291, 444
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 286, 329, 491, 545, 596
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 622
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 3 cut(s) 118, 139, 553
AluI AGCT 3 cut(s) 118, 139, 553
Alw21I GWGCWC 2 cut(s) 528, 555
Alw26I GTCTC 3 cut(s) 2, 315, 362
Alw44I GTGCAC 1 cut(s) 524
AlwI GGATC 3 cut(s) 185, 341, 354
Aor13HI TCCGGA 2 cut(s) 124, 587
AoxI GGCC 2 cut(s) 581, 620
ApaLI GTGCAC 1 cut(s) 524
ApoI RAATTY 3 cut(s) 128, 392, 492
AspS9I GGNCC 1 cut(s) 620
AsuC2I CCSGG 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 78, 528
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 235, 555
BauI CACGAG 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 528, 555
BccI CCATC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 624
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 2, 315, 362
BfaI CTAG 2 cut(s) 318, 648
BfmI CTRYAG 1 cut(s) 680
BlpI GCTNAGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 215, 624
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 5 cut(s) 123, 348, 419, 621, 645
BmrFI CCNGG 2 cut(s) 215, 624
BmsI GCATC 3 cut(s) 91, 170, 229
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 189
BsaWI WCCGGW 2 cut(s) 124, 587
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bse1I ACTGG 1 cut(s) 350
BseAI TCCGGA 2 cut(s) 124, 587
BseBI CCWGG 1 cut(s) 624
BseCI ATCGAT 1 cut(s) 189
BseGI GGATG 6 cut(s) 106, 185, 223, 244, 409, 544
BseMII CTCAG 2 cut(s) 218, 248
BseNI ACTGG 1 cut(s) 350
BseSI GKGCMC 2 cut(s) 78, 528
BshFI GGCC 2 cut(s) 583, 622
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 528, 555
BsiSI CCGG 3 cut(s) 125, 215, 588
BsiWI CGTACG 1 cut(s) 51
BsmAI GTCTC 3 cut(s) 2, 315, 362
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 2 cut(s) 583, 622
Bsp1286I GDGCHC 4 cut(s) 78, 235, 528, 555
Bsp13I TCCGGA 2 cut(s) 124, 587
Bsp143I GATC 4 cut(s) 90, 190, 346, 664
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 2 cut(s) 415, 500
BspANI GGCC 2 cut(s) 583, 622
BspCNI CTCAG 2 cut(s) 219, 247
BspDI ATCGAT 1 cut(s) 189
BspEI TCCGGA 2 cut(s) 124, 587
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 5 cut(s) 123, 348, 419, 621, 645
BspPI GGATC 3 cut(s) 185, 341, 354
BsrI ACTGG 1 cut(s) 350
BssMI GATC 4 cut(s) 90, 190, 346, 664
BssSI CACGAG 1 cut(s) 506
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 3 cut(s) 294, 363, 530
BstDEI CTNAG 4 cut(s) 135, 145, 227, 234
BstF5I GGATG 6 cut(s) 106, 185, 223, 244, 409, 544
BstKTI GATC 4 cut(s) 93, 193, 349, 667
BstMAI GTCTC 3 cut(s) 2, 315, 362
BstMBI GATC 4 cut(s) 90, 190, 346, 664
BstMWI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 470
BstNI CCWGG 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 213, 622
BstSFI CTRYAG 1 cut(s) 680
BstSLI GKGCMC 2 cut(s) 78, 528
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu15I ATCGAT 1 cut(s) 189
BsuRI GGCC 2 cut(s) 583, 622
BsuTUI ATCGAT 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 6 cut(s) 106, 185, 223, 244, 409, 544
BtsIMutI CAGTG 3 cut(s) 357, 609, 656
CciI TCATGA 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 620
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 5 cut(s) 19, 52, 111, 290, 443
CviAII CATG 4 cut(s) 156, 170, 397, 606
CviJI RGCY 7 cut(s) 118, 139, 144, 233, 553, 583, 622
CviKI_1 RGCY 7 cut(s) 118, 139, 144, 233, 553, 583, 622
CviQI GTAC 5 cut(s) 19, 52, 111, 290, 443
DdeI CTNAG 4 cut(s) 135, 145, 227, 234
DpnI GATC 4 cut(s) 92, 192, 348, 666
DpnII GATC 4 cut(s) 90, 190, 346, 664
DraIII CACNNNGTG 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 553
Eco147I AGGCCT 1 cut(s) 583
Eco24I GRGCYC 2 cut(s) 235, 555
Eco53kI GAGCTC 1 cut(s) 553
EcoICRI GAGCTC 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 235, 555
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 159, 173, 400, 609
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 4 cut(s) 155, 169, 396, 605
FbaI TGATCA 1 cut(s) 664
FokI GGATG 6 cut(s) 113, 192, 230, 251, 416, 551
FriOI GRGCYC 2 cut(s) 235, 555
FspBI CTAG 2 cut(s) 318, 648
HaeIII GGCC 2 cut(s) 583, 622
HapII CCGG 3 cut(s) 125, 215, 588
Hin1II CATG 4 cut(s) 159, 173, 400, 609
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 56, 614
HpaII CCGG 3 cut(s) 125, 215, 588
Hpy166II GTNNAC 5 cut(s) 37, 113, 359, 428, 526
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 7 cut(s) 83, 125, 236, 344, 367, 397, 588
Hpy8I GTNNAC 5 cut(s) 37, 113, 359, 428, 526
HpyAV CCTTC 2 cut(s) 394, 594
HpyCH4III ACNGT 3 cut(s) 294, 363, 530
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 153, 183, 479, 526, 609
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 470
HpyF3I CTNAG 4 cut(s) 135, 145, 227, 234
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 159, 173, 400, 609
Kpn2I TCCGGA 2 cut(s) 124, 587
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 4 cut(s) 90, 190, 346, 664
LmnI GCTCC 1 cut(s) 558
LweI GCATC 3 cut(s) 91, 170, 229
MaeI CTAG 2 cut(s) 318, 648
MaeII ACGT 1 cut(s) 27
MalI GATC 4 cut(s) 92, 192, 348, 666
MboI GATC 4 cut(s) 90, 190, 346, 664
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 4 cut(s) 78, 235, 528, 555
MluCI AATT 4 cut(s) 128, 392, 492, 532
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 3 cut(s) 34, 222, 573
MroI TCCGGA 2 cut(s) 124, 587
MseI TTAA 3 cut(s) 69, 311, 432
MspA1I CMGCKG 2 cut(s) 118, 415
MspI CCGG 3 cut(s) 125, 215, 588
MspR9I CCNGG 2 cut(s) 215, 624
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 470
NciI CCSGG 1 cut(s) 215
NdeII GATC 4 cut(s) 90, 190, 346, 664
NlaIII CATG 4 cut(s) 159, 173, 400, 609
NlaIV GGNNCC 5 cut(s) 123, 348, 419, 621, 645
NmeAIII GCCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 583
PfeI GAWTC 1 cut(s) 614
Pfl23II CGTACG 1 cut(s) 51
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 555
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 5 cut(s) 123, 348, 419, 621, 645
PspPI GGNCC 1 cut(s) 620
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 5 cut(s) 20, 53, 112, 291, 444
RsaNI GTAC 5 cut(s) 19, 52, 111, 290, 443
SacI GAGCTC 1 cut(s) 555
SaqAI TTAA 3 cut(s) 69, 311, 432
Sau3AI GATC 4 cut(s) 90, 190, 346, 664
Sau96I GGNCC 1 cut(s) 620
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 215, 624
SduI GDGCHC 4 cut(s) 78, 235, 528, 555
SetI ASST 8 cut(s) 30, 45, 120, 141, 439, 448, 555, 649
SfaNI GCATC 3 cut(s) 91, 170, 229
SfcI CTRYAG 1 cut(s) 680
Sse9I AATT 4 cut(s) 128, 392, 492, 532
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 2 cut(s) 415, 500
SspI AATATT 1 cut(s) 486
SspMI CTAG 2 cut(s) 318, 648
SstI GAGCTC 1 cut(s) 555
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 213, 622
TaaI ACNGT 3 cut(s) 294, 363, 530
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 93, 189, 366
TasI AATT 4 cut(s) 128, 392, 492, 532
TatI WGTACW 2 cut(s) 110, 289
TfiI GAWTC 1 cut(s) 614
Tru1I TTAA 3 cut(s) 69, 311, 432
Tru9I TTAA 3 cut(s) 69, 311, 432
TscAI CASTG 3 cut(s) 357, 616, 663
TspDTI ATGAA 6 cut(s) 186, 244, 385, 402, 413, 465
TspRI CASTG 3 cut(s) 357, 616, 663
VneI GTGCAC 1 cut(s) 524
XapI RAATTY 3 cut(s) 128, 392, 492
XspI CTAG 2 cut(s) 318, 648
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.