Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001291.1

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

1397 .. 3019

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001291.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atggtaggcttggtcgccaacagctgtggtgggcatgctccaggatggcaagatgtgcagcctcatgatcctcaagttcaagatgcagccaaccatgttgtgaagagccttcaacaaaagttcaattcattgttcccttatgagcttcaagagattgtccatgctaaggcagaggctatggattcatttgagccctatggaaatggaacaaatggagagaatggcgcaaatgtagaaaatgacgcaaatggagaaaacagggcagatggaaacggggcagagcatgcattgccacccccaccccctgttatcccaccagatgttgttccattagtgctcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

114

Amino Acids

12.08

Weight (kDa)

4.57

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	80, 113, 124, 149
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	24, 145
AluI	AGCT	2 cut(s)	24, 145
Alw21I	GWGCWC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	58, 86
AspLEI	GCGC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	70, 98
BccI	CCATC	2 cut(s)	39, 260
BciT130I	CCWGG	1 cut(s)	42
BisI	GCNGC	2 cut(s)	59, 87
BlsI	GCNGC	2 cut(s)	60, 88
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	57, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	70, 98
BsgI	GTGCAG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	166
Bsp1286I	GDGCHC	2 cut(s)	195, 339
Bsp143I	GATC	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	64
BspPI	GGATC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	287
BssMI	GATC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	3 cut(s)	55, 284, 289
BstC8I	GCNNGC	2 cut(s)	36, 285
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 284, 289
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	2 cut(s)	38, 287
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	70, 98
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	2 cut(s)	36, 285
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	227
CseI	GACGC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	5 cut(s)	35, 65, 95, 161, 284
CviJI	RGCY	8 cut(s)	9, 24, 61, 89, 108, 145, 176, 193
CviKI_1	RGCY	8 cut(s)	9, 24, 61, 89, 108, 145, 176, 193
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	5 cut(s)	38, 68, 98, 164, 287
FaiI	YATR	8 cut(s)	36, 66, 96, 141, 162, 179, 198, 285
FatI	CATG	5 cut(s)	34, 64, 94, 160, 283
Fnu4HI	GCNGC	2 cut(s)	59, 87
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	59, 87
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	59, 87
GsuI	CTGGAG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	5 cut(s)	38, 68, 98, 164, 287
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	182
Hpy188III	TCNNGA	3 cut(s)	65, 80, 149
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	3 cut(s)	58, 86, 287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 284, 289
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	38, 68, 98, 164, 287
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	67
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	5 cut(s)	27, 54, 244, 318, 330
Lsp1109I	GCAGC	2 cut(s)	70, 98
LweI	GCATC	1 cut(s)	73
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	195, 339
MluCI	AATT	1 cut(s)	124
MnlI	CCTC	3 cut(s)	72, 81, 166
Mph1103I	ATGCAT	1 cut(s)	289
MspA1I	CMGCKG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	55, 284, 289
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	5 cut(s)	38, 68, 98, 164, 287
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	2 cut(s)	38, 287
PaeI	GCATGC	2 cut(s)	38, 287
PagI	TCATGA	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	60, 88
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	2 cut(s)	59, 87
Sau3AI	GATC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	195, 339
SetI	ASST	2 cut(s)	26, 147
SfaNI	GCATC	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	72, 338
SmoI	CTYRAG	2 cut(s)	72, 338
SphI	GCATGC	2 cut(s)	38, 287
Sse9I	AATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	40
TasI	AATT	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	58, 86
TspDTI	ATGAA	2 cut(s)	117, 174
XceI	RCATGY	2 cut(s)	38, 287
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.