Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

30019234 .. 30061742

Gene Structure 42509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG172600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAGATGTGCGTCAGATGCAACTGGTGCAGAGTTGATCGGTGGTCGGAAGGTGAAGTTACGGCCGGATTTGGGTTTAGGCTCGCAGGCTCACTTGCAACTACGGCGGGGCAGAGGCCTCTCTCTTCATCGACGCTGAGAAGGAGCCTCTGCGTGGTTGATCCTCCGACACGGCGTCGTTTGGAGTGCGTTGCGAGCAACCATGCGTCATTTGCTTCCGGCGGTGGAAATGGTGGCTTCGGCGGTGAGAGTGGTGGCAGCGGCGGCGATGGTGGAGGTAGTTCGGACGGTGGCGATGCCAAGTCCAAGGTCGTTGCGTCTGGGGGCGATGACGTCTCGGCCGTCTCGACTGATGTCATACTGCTGCATGTTGGAGGAATGACATGCGGGGGATGTGCAGCAAGTGTGAAGCGAATTCTAGAAAGCCAACCACAGGTATCATCTGCTAGTGTAAATCTTACGACTGAGGTGGCAATTGTCTGGCCTGTGTCTGAAGCCAAGCTCTCACCAAACTGGCAAAAGCAGTTGGGAGAGACACTTGCAAACCATTTGACTAATTGTGGTTTCAATTCTAACATTCGTGAAGATGAAGTCTCCTCTGGTCTCGATACTTTTTTAAAATATCTCTTCATAACTGCATTGAAAGTACTGTCGGGCGATGAGTGGTTAATCACTAGAGACTTTGAAGACGAGATTAGTCAGGATCCAGTGCGTGAACGGTTCGAGACTTTTATTTCCAAATATGAAAAATTCATGAAGGATGTTGGTCAGCGGTTCCCCTGTGAACTTAAACCTAATGTACCTAATGAACATTCTATCGCTTTTGTGGCAAATGCACGAATATTTGAAATTATGGCGGTTCTCGTGTGGCAAGTAGTTGTGCACGGTAATTTGGATGTTGAACAAGAGCTCCATAGTTTGTTGGAGTTTTATGAGAGGCCTTCCGGATTTGAACATAATCCATGCACTGATTCGGGGCCTGGATATGATGGAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008152 GO:0008324 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009767 GO:0009941 GO:0009987 GO:0015075 GO:0015318 GO:0015979 GO:0016530 GO:0016531 GO:0019684 GO:0022857 GO:0022890 GO:0022900 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0035434 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046873 GO:0046914 GO:0046915 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055070 GO:0055076 GO:0055080 GO:0055085 GO:0055114 GO:0065007 GO:0065008 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0140104

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

332

Amino Acids

35.77

Weight (kDa)

5.1

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	122 - 166	2e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	944
AciI	CCGC	8 cut(s)	107, 222, 243, 261, 264, 387, 772, 857
AclWI	GGATC	3 cut(s)	155, 698, 711
AcoI	YGGCCR	2 cut(s)	63, 339
AcsI	RAATTY	2 cut(s)	414, 749
AcuI	CTGAAG	1 cut(s)	513
AcyI	GRCGYC	2 cut(s)	175, 333
AfaI	GTAC	2 cut(s)	648, 801
AfiI	CCNNNNNNNGG	3 cut(s)	72, 154, 433
AgsI	TTSAA	6 cut(s)	568, 643, 686, 848, 902, 953
AhdI	GACNNNNNGTC	1 cut(s)	174
AjnI	CCWGG	1 cut(s)	979
AloI	GAACNNNNNNTCC	2 cut(s)	894, 926
AluBI	AGCT	2 cut(s)	502, 910
AluI	AGCT	2 cut(s)	502, 910
Alw21I	GWGCWC	2 cut(s)	885, 912
Alw26I	GTCTC	7 cut(s)	340, 349, 527, 598, 608, 672, 719
Alw44I	GTGCAC	1 cut(s)	881
AlwI	GGATC	3 cut(s)	155, 698, 711
Aor13HI	TCCGGA	1 cut(s)	944
AoxI	GGCC	6 cut(s)	63, 116, 339, 482, 938, 977
ApaLI	GTGCAC	1 cut(s)	881
ApeKI	GCWGC	3 cut(s)	258, 364, 398
ApoI	RAATTY	2 cut(s)	414, 749
AspS9I	GGNCC	1 cut(s)	977
AsuHPI	GGTGA	3 cut(s)	65, 257, 498
BaeGI	GKGCMC	1 cut(s)	885
BamHI	GGATCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	912
BauI	CACGAG	1 cut(s)	863
BbsI	GAAGAC	1 cut(s)	693
Bbv12I	GWGCWC	2 cut(s)	885, 912
BbvI	GCAGC	3 cut(s)	270, 351, 410
BccI	CCATC	2 cut(s)	263, 983
BceAI	ACGGC	4 cut(s)	78, 120, 188, 326
BciT130I	CCWGG	1 cut(s)	981
BcoDI	GTCTC	7 cut(s)	340, 349, 527, 598, 608, 672, 719
BfaI	CTAG	4 cut(s)	419, 447, 675, 997
BisI	GCNGC	5 cut(s)	259, 262, 265, 365, 399
BlsI	GCNGC	5 cut(s)	260, 263, 266, 366, 400
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	1 cut(s)	981
BmeRI	GACNNNNNGTC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	5 cut(s)	146, 705, 776, 978, 994
BmrFI	CCNGG	1 cut(s)	981
BmsI	GCATC	2 cut(s)	8, 286
BoxI	GACNNNNGTC	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	693
BsaHI	GRCGYC	2 cut(s)	175, 333
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	944
BsaXI	ACNNNNNCTCC	2 cut(s)	894, 924
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 154, 433
Bse1I	ACTGG	3 cut(s)	29, 518, 707
BseAI	TCCGGA	1 cut(s)	944
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	398, 766, 901
BseLI	CCNNNNNNNGG	3 cut(s)	72, 154, 433
BseMII	CTCAG	2 cut(s)	128, 456
BseNI	ACTGG	3 cut(s)	29, 518, 707
BseRI	GAGGAG	1 cut(s)	586
BseSI	GKGCMC	1 cut(s)	885
BseX3I	CGGCCG	2 cut(s)	63, 339
BseXI	GCAGC	3 cut(s)	270, 351, 410
BsgI	GTGCAG	2 cut(s)	49, 417
Bsh1285I	CGRYCG	2 cut(s)	66, 342
BshFI	GGCC	6 cut(s)	65, 118, 341, 484, 940, 979
BsiEI	CGRYCG	2 cut(s)	66, 342
BsiHKAI	GWGCWC	2 cut(s)	885, 912
BsiSI	CCGG	3 cut(s)	66, 219, 945
BslI	CCNNNNNNNGG	3 cut(s)	72, 154, 433
BsmAI	GTCTC	7 cut(s)	340, 349, 527, 598, 608, 672, 719
BsmBI	CGTCTC	2 cut(s)	340, 349
BsnI	GGCC	6 cut(s)	65, 118, 341, 484, 940, 979
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	885, 912
Bsp13I	TCCGGA	1 cut(s)	944
Bsp143I	GATC	3 cut(s)	37, 160, 703
BspACI	CCGC	8 cut(s)	107, 222, 243, 261, 264, 387, 772, 857
BspANI	GGCC	6 cut(s)	65, 118, 341, 484, 940, 979
BspCNI	CTCAG	2 cut(s)	129, 457
BspEI	TCCGGA	1 cut(s)	944
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	5 cut(s)	146, 705, 776, 978, 994
BspPI	GGATC	3 cut(s)	155, 698, 711
BspTNI	GGTCTC	1 cut(s)	608
BsrI	ACTGG	3 cut(s)	29, 518, 707
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	3 cut(s)	37, 160, 703
BssNI	GRCGYC	2 cut(s)	175, 333
BssSI	CACGAG	1 cut(s)	863
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	863
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	4 cut(s)	290, 651, 720, 887
Bst6I	CTCTTC	2 cut(s)	130, 632
BstACI	GRCGYC	2 cut(s)	175, 333
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	84, 88, 196
BstDEI	CTNAG	2 cut(s)	137, 465
BstF5I	GGATG	3 cut(s)	398, 766, 901
BstKTI	GATC	3 cut(s)	40, 163, 706
BstMAI	GTCTC	7 cut(s)	340, 349, 527, 598, 608, 672, 719
BstMBI	GATC	3 cut(s)	37, 160, 703
BstMCI	CGRYCG	2 cut(s)	66, 342
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 27, 104, 195, 212, 264, 827
BstNI	CCWGG	1 cut(s)	981
BstNSI	RCATGY	2 cut(s)	371, 387
BstPAI	GACNNNNGTC	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	979
BstSLI	GKGCMC	1 cut(s)	885
BstV1I	GCAGC	3 cut(s)	270, 351, 410
BstV2I	GAAGAC	1 cut(s)	693
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BstZI	CGGCCG	2 cut(s)	63, 339
BsuRI	GGCC	6 cut(s)	65, 118, 341, 484, 940, 979
BtgZI	GCGATG	4 cut(s)	282, 309, 342, 672
BtsCI	GGATG	3 cut(s)	398, 766, 901
BtsIMutI	CAGTG	2 cut(s)	714, 966
Cac8I	GCNNGC	3 cut(s)	84, 88, 196
CciI	TCATGA	1 cut(s)	753
Cfr13I	GGNCC	1 cut(s)	977
CseI	GACGC	4 cut(s)	142, 164, 195, 306
Csp6I	GTAC	2 cut(s)	647, 800
CviAII	CATG	5 cut(s)	203, 368, 384, 754, 963
CviQI	GTAC	2 cut(s)	647, 800
DdeI	CTNAG	2 cut(s)	137, 465
DpnI	GATC	3 cut(s)	39, 162, 705
DpnII	GATC	3 cut(s)	37, 160, 703
DraI	TTTAAA	1 cut(s)	618
DriI	GACNNNNNGTC	1 cut(s)	174
EaeI	YGGCCR	2 cut(s)	63, 339
EagI	CGGCCG	2 cut(s)	63, 339
Eam1104I	CTCTTC	2 cut(s)	130, 632
Eam1105I	GACNNNNNGTC	1 cut(s)	174
EarI	CTCTTC	2 cut(s)	130, 632
Ecl136II	GAGCTC	1 cut(s)	910
EclXI	CGGCCG	2 cut(s)	63, 339
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	2 cut(s)	118, 940
Eco24I	GRGCYC	1 cut(s)	912
Eco31I	GGTCTC	1 cut(s)	608
Eco52I	CGGCCG	2 cut(s)	63, 339
Eco53kI	GAGCTC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRI	GAATTC	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	979
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	912
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	2 cut(s)	340, 349
FaeI	CATG	5 cut(s)	206, 371, 387, 757, 966
FatI	CATG	5 cut(s)	202, 367, 383, 753, 962
FauI	CCCGC	2 cut(s)	100, 380
Fnu4HI	GCNGC	5 cut(s)	259, 262, 265, 365, 399
FokI	GGATG	3 cut(s)	405, 773, 908
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	5 cut(s)	259, 262, 265, 365, 399
FspBI	CTAG	4 cut(s)	419, 447, 675, 997
GluI	GCNGC	5 cut(s)	259, 262, 265, 365, 399
HaeIII	GGCC	6 cut(s)	65, 118, 341, 484, 940, 979
HapII	CCGG	3 cut(s)	66, 219, 945
HgaI	GACGC	4 cut(s)	142, 164, 195, 306
Hin1I	GRCGYC	2 cut(s)	175, 333
Hin1II	CATG	5 cut(s)	206, 371, 387, 757, 966
HinfI	GANTC	1 cut(s)	971
HpaII	CCGG	3 cut(s)	66, 219, 945
HphI	GGTGA	3 cut(s)	65, 257, 498
Hpy166II	GTNNAC	3 cut(s)	716, 785, 883
Hpy188I	TCNGA	5 cut(s)	17, 49, 168, 286, 493
Hpy188III	TCNNGA	8 cut(s)	346, 419, 581, 605, 701, 724, 754, 945
Hpy8I	GTNNAC	3 cut(s)	716, 785, 883
Hpy99I	CGWCG	2 cut(s)	136, 180
HpyAV	CCTTC	4 cut(s)	44, 135, 751, 951
HpyCH4III	ACNGT	4 cut(s)	290, 651, 720, 887
HpyCH4IV	ACGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 27, 104, 195, 212, 264, 827
HpyF3I	CTNAG	2 cut(s)	137, 465
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	2 cut(s)	175, 333
Hsp92II	CATG	5 cut(s)	206, 371, 387, 757, 966
Kpn2I	TCCGGA	1 cut(s)	944
Kzo9I	GATC	3 cut(s)	37, 160, 703
LmnI	GCTCC	2 cut(s)	144, 915
Lsp1109I	GCAGC	3 cut(s)	270, 351, 410
LweI	GCATC	2 cut(s)	8, 286
MaeI	CTAG	4 cut(s)	419, 447, 675, 997
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	39, 162, 705
MboI	GATC	3 cut(s)	37, 160, 703
MboII	GAAGA	5 cut(s)	16, 117, 596, 619, 698
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	2 cut(s)	885, 912
MluCI	AATT	7 cut(s)	414, 474, 556, 568, 749, 849, 889
MmeI	TCCRAC	4 cut(s)	27, 191, 352, 903
MnlI	CCTC	9 cut(s)	108, 129, 158, 174, 269, 368, 460, 607, 930
MroI	TCCGGA	1 cut(s)	944
MseI	TTAA	3 cut(s)	617, 668, 789
MspA1I	CMGCKG	2 cut(s)	261, 772
MspI	CCGG	3 cut(s)	66, 219, 945
MspR9I	CCNGG	1 cut(s)	981
MunI	CAATTG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	981
MwoI	GCNNNNNNNGC	7 cut(s)	18, 27, 104, 195, 212, 264, 827
NdeII	GATC	3 cut(s)	37, 160, 703
NlaIII	CATG	5 cut(s)	206, 371, 387, 757, 966
NlaIV	GGNNCC	5 cut(s)	146, 705, 776, 978, 994
NmeAIII	GCCGAG	1 cut(s)	317
NspI	RCATGY	2 cut(s)	371, 387
PagI	TCATGA	1 cut(s)	753
PceI	AGGCCT	2 cut(s)	118, 940
PcsI	WCGNNNNNNNCGW	2 cut(s)	339, 344
PfeI	GAWTC	1 cut(s)	971
PkrI	GCNGC	5 cut(s)	260, 263, 266, 366, 400
PshAI	GACNNNNGTC	1 cut(s)	353
Psp124BI	GAGCTC	1 cut(s)	912
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspN4I	GGNNCC	5 cut(s)	146, 705, 776, 978, 994
PspPI	GGNCC	1 cut(s)	977
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	2 cut(s)	648, 801
RsaNI	GTAC	2 cut(s)	647, 800
SacI	GAGCTC	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	617, 668, 789
SatI	GCNGC	5 cut(s)	259, 262, 265, 365, 399
Sau3AI	GATC	3 cut(s)	37, 160, 703
Sau96I	GGNCC	1 cut(s)	977
ScaI	AGTACT	1 cut(s)	648
ScrFI	CCNGG	1 cut(s)	981
SduI	GDGCHC	2 cut(s)	885, 912
SfaNI	GCATC	2 cut(s)	8, 286
Sse9I	AATT	7 cut(s)	414, 474, 556, 568, 749, 849, 889
SseBI	AGGCCT	2 cut(s)	118, 940
SsiI	CCGC	8 cut(s)	107, 222, 243, 261, 264, 387, 772, 857
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	4 cut(s)	419, 447, 675, 997
SstI	GAGCTC	1 cut(s)	912
StuI	AGGCCT	2 cut(s)	118, 940
StyD4I	CCNGG	1 cut(s)	979
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	4 cut(s)	290, 651, 720, 887
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	4 cut(s)	131, 347, 606, 723
TasI	AATT	7 cut(s)	414, 474, 556, 568, 749, 849, 889
TatI	WGTACW	1 cut(s)	646
TauI	GCSGC	2 cut(s)	264, 267
TfiI	GAWTC	1 cut(s)	971
Tru1I	TTAA	3 cut(s)	617, 668, 789
Tru9I	TTAA	3 cut(s)	617, 668, 789
TscAI	CASTG	2 cut(s)	714, 973
TseI	GCWGC	3 cut(s)	258, 364, 398
TspDTI	ATGAA	8 cut(s)	17, 117, 603, 619, 742, 759, 770, 822
TspRI	CASTG	2 cut(s)	714, 973
VneI	GTGCAC	1 cut(s)	881
XapI	RAATTY	2 cut(s)	414, 749
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	2 cut(s)	371, 387
XspI	CTAG	4 cut(s)	419, 447, 675, 997
ZraI	GACGTC	1 cut(s)	334
ZrmI	AGTACT	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.