Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

35423750 .. 35425780

Gene Structure 2031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGTTCGATTCCTTCAAGCTGACACCCGCGGCTGGGAGTACTCAGGCACAATTGGTTGAACGGTACAACATTTTTAAAGGCCTATATCAACATCATCCTGAGCTTCAGGCGTTGCCCTGTGCAATTAGGTTTTATGATGAACCTGATATTTCTCTCGTGGCAAGTAAACTATTCATTTATCTACTGGTAGATTTCTCGGTGGAATTCATTAAGTGCGGTGGTGATTTTGAAAGCCTGGCCAAGAAGTTGTTGGAAGATCATGAAACACTAAAGGATCACCCATTTCCATACATGGATGATACGATGGAGACTGGCAAAGCACTAAGTGATGAACTGGGCAGATGTAATCTGCTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

4.73

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	32
AciI	CCGC	3 cut(s)	30, 32, 219
AclWI	GGATC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	92
AdeI	CACNNNGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	43, 68
AfiI	CCNNNNNNNGG	2 cut(s)	35, 36
AgsI	TTSAA	3 cut(s)	19, 62, 233
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	2 cut(s)	22, 106
AluI	AGCT	2 cut(s)	22, 106
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	2 cut(s)	82, 240
ApoI	RAATTY	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	236, 272
BalI	TGGCCA	1 cut(s)	242
BauI	CACGAG	1 cut(s)	158
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmcAI	AGTACT	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	239
BmrI	ACTGGG	1 cut(s)	347
BmuI	ACTGGG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 36
Bse1I	ACTGG	3 cut(s)	192, 319, 342
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	97, 304
BseLI	CCNNNNNNNGG	2 cut(s)	35, 36
BseMII	CTCAG	2 cut(s)	59, 93
BseNI	ACTGG	3 cut(s)	192, 319, 342
BseYI	CCCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	84, 242
BslI	CCNNNNNNNGG	2 cut(s)	35, 36
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	84, 242
Bsp143I	GATC	2 cut(s)	259, 277
BspACI	CCGC	3 cut(s)	30, 32, 219
BspANI	GGCC	2 cut(s)	84, 242
BspCNI	CTCAG	2 cut(s)	58, 94
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	262
BspPI	GGATC	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	192, 319, 342
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	259, 277
BssSI	CACGAG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	45, 102, 326
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	97, 304
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	262, 280
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	259, 277
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	84, 242
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	97, 304
CciI	TCATGA	1 cut(s)	262
Cfr42I	CCGCGG	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	42, 67
CviAII	CATG	2 cut(s)	263, 295
CviJI	RGCY	6 cut(s)	22, 35, 84, 106, 237, 242
CviKI_1	RGCY	6 cut(s)	22, 35, 84, 106, 237, 242
CviQI	GTAC	2 cut(s)	42, 67
DdeI	CTNAG	3 cut(s)	45, 102, 326
DpnI	GATC	2 cut(s)	261, 279
DpnII	GATC	2 cut(s)	259, 277
DraI	TTTAAA	1 cut(s)	79
DraIII	CACNNNGTG	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	237
FaeI	CATG	2 cut(s)	266, 298
FaiI	YATR	5 cut(s)	88, 138, 264, 292, 296
FatI	CATG	2 cut(s)	262, 294
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	84, 311
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	2 cut(s)	84, 242
Hin1II	CATG	2 cut(s)	266, 298
HinfI	GANTC	1 cut(s)	11
HphI	GGTGA	2 cut(s)	236, 272
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	101, 263
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	125
HpyF3I	CTNAG	3 cut(s)	45, 102, 326
Hsp92II	CATG	2 cut(s)	266, 298
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	259, 277
MalI	GATC	2 cut(s)	261, 279
MboI	GATC	2 cut(s)	259, 277
MboII	GAAGA	1 cut(s)	269
MfeI	CAATTG	1 cut(s)	53
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	3 cut(s)	53, 126, 206
MluNI	TGGCCA	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	234
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	2 cut(s)	78, 213
Msp20I	TGGCCA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	32
NdeII	GATC	2 cut(s)	259, 277
NlaIII	CATG	2 cut(s)	266, 298
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	237
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	43, 68
RsaNI	GTAC	2 cut(s)	42, 67
SacII	CCGCGG	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	78, 213
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	259, 277
ScaI	AGTACT	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	239
SetI	ASST	5 cut(s)	24, 108, 134, 148, 362
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
Sse9I	AATT	3 cut(s)	53, 126, 206
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	30, 32, 219
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	53, 126, 206
TatI	WGTACW	1 cut(s)	41
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	2 cut(s)	78, 213
Tru9I	TTAA	2 cut(s)	78, 213
TspDTI	ATGAA	5 cut(s)	156, 166, 199, 279, 348
XapI	RAATTY	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.