Rorug01G0181800

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000575
Physical Location & Seq
Forward (+)
25045669 .. 25046268
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0181800.1

Sequence Viewer

Length: 600 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTCATCTGCACCTGCTTTTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCTATGAACATAGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGATCACGATGGTGGCTCTCACATTTCCCTTGAGCTCAACCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

199

Amino Acids

22.05

Weight (kDa)

8.99

Isoelectric Point (pI)

65.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 7.1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 361
Acc36I ACCTGC 3 cut(s) 78, 160, 361
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 4 cut(s) 82, 369, 414, 595
AclWI GGATC 2 cut(s) 188, 430
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 220, 443
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 4 cut(s) 130, 193, 550, 575
AluI AGCT 4 cut(s) 130, 193, 550, 575
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 188, 430
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 482
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 552
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 62
BccI CCATC 4 cut(s) 26, 394, 500, 518
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 361
BisI GCNGC 2 cut(s) 51, 595
BlsI GCNGC 2 cut(s) 52, 596
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 3 cut(s) 6, 155, 593
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 173
BpuEI CTTGAG 2 cut(s) 107, 566
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 467
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 589
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 552
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 422, 517
BspACI CCGC 4 cut(s) 82, 369, 414, 595
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 6, 155, 593
BspMI ACCTGC 3 cut(s) 78, 160, 361
BspPI GGATC 2 cut(s) 188, 430
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 422, 517
Bst6I CTCTTC 1 cut(s) 266
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 425, 520
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 422, 517
BstMWI GCNNNNNNNGC 2 cut(s) 79, 368
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 180, 422
BstYI RGATCY 2 cut(s) 180, 422
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 3 cut(s) 78, 160, 361
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 6 cut(s) 70, 293, 301, 463, 467, 490
CviJI RGCY 9 cut(s) 53, 130, 193, 254, 316, 531, 550, 575, 594
CviKI_1 RGCY 9 cut(s) 53, 130, 193, 254, 316, 531, 550, 575, 594
CviQI GTAC 1 cut(s) 202
DpnI GATC 6 cut(s) 108, 182, 212, 310, 424, 519
DpnII GATC 6 cut(s) 106, 180, 210, 308, 422, 517
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 256, 552
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 256, 552
FaeI CATG 6 cut(s) 73, 296, 304, 466, 470, 493
FaqI GGGAC 1 cut(s) 139
FatI CATG 6 cut(s) 69, 292, 300, 462, 466, 489
Fnu4HI GCNGC 2 cut(s) 51, 595
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 552
Fsp4HI GCNGC 2 cut(s) 51, 595
GluI GCNGC 2 cut(s) 51, 595
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 589
Hin1II CATG 6 cut(s) 73, 296, 304, 466, 470, 493
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 2 cut(s) 54, 589
HphI GGTGA 2 cut(s) 335, 482
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 4 cut(s) 111, 177, 286, 505
Hpy188III TCNNGA 5 cut(s) 220, 241, 257, 521, 589
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyAV CCTTC 1 cut(s) 458
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 350, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 368
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 6 cut(s) 73, 296, 304, 466, 470, 493
Kpn2I TCCGGA 1 cut(s) 588
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 422, 517
LmnI GCTCC 3 cut(s) 84, 127, 591
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 334
MalI GATC 6 cut(s) 108, 182, 212, 310, 424, 519
MboI GATC 6 cut(s) 106, 180, 210, 308, 422, 517
MboII GAAGA 4 cut(s) 280, 283, 357, 505
MflI RGATCY 2 cut(s) 180, 422
MhlI GDGCHC 3 cut(s) 256, 300, 552
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 9 cut(s) 22, 29, 131, 171, 267, 462, 466, 503, 559
Mph1103I ATGCAT 1 cut(s) 468
MroI TCCGGA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 3 cut(s) 193, 371, 597
MspI CCGG 2 cut(s) 54, 589
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 368
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 422, 517
NlaIII CATG 6 cut(s) 73, 296, 304, 466, 470, 493
NlaIV GGNNCC 3 cut(s) 6, 155, 593
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 525
PaqCI CACCTGC 2 cut(s) 78, 361
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 596
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 593
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 422
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 51, 595
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 422, 517
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 552
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 122, 545
SmoI CTYRAG 2 cut(s) 122, 545
Sse9I AATT 1 cut(s) 340
SsiI CCGC 4 cut(s) 82, 369, 414, 595
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 53
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 4 cut(s) 281, 333, 443, 506
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 447
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.