Rorug05G0321800

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000575
Physical Location & Seq
Reverse (-)
38359123 .. 38360683
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0321800.1

Sequence Viewer

Length: 393 bp
ATGGAGAGATCTGGTAGAGGCGGCGCCGATTTTCGGGAATTGCTTCAGAGATCCTCAGGAGGTCCGATTTCGTTTGTAGATCGACGCATGATAGATTTCCGATTCATGCTTTTCACCATTCGGCAAATTTTTTCGCGATTGGCTGGTGAGCTAACTGCTGCCAAAATTAATAACCTGATGTACATTGTGGGAAATCCCCGTCAGTTCAAGATCCCTGACTGGTTTCTCAACACAAAGAAGGATTACAATGATGGAATCACCGTGGTGTTCGACACTACTAGGGCCTTTGTGTGCTTGGACAACACAGCAAGACCATTGGCCACAGCGGGAAGACTGTTGGAGTGTCCAAGAAGCGTTGAAGAACATATTTTGGCTGTTTGGGAGCATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

9.18

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13 PF00416 48 - 87 6.5e-06 Ribosomal protein S13/S18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AccII CGCG 1 cut(s) 136
AciI CCGC 2 cut(s) 21, 326
AclWI GGATC 2 cut(s) 45, 205
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 2 cut(s) 208, 359
AleI CACNNNNGTG 1 cut(s) 263
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AlwI GGATC 2 cut(s) 45, 205
AoxI GGCC 2 cut(s) 282, 318
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 126
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 62, 282
AsuHPI GGTGA 3 cut(s) 106, 158, 250
AvaII GGWCC 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 55
BalI TGGCCA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 337
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 245
BfaI CTAG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 27
BglII AGATCT 1 cut(s) 8
BisI GCNGC 2 cut(s) 22, 159
BlsI GCNGC 2 cut(s) 23, 160
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 282
BmiI GGNNCC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 337
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 261
BsaXI ACNNNNNCTCC 1 cut(s) 374
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 224
Bse21I CCTNAGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 284, 320
BshNI GGYRCC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 33
BsnI GGCC 2 cut(s) 284, 320
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 4 cut(s) 8, 50, 79, 210
Bsp68I TCGCGA 1 cut(s) 136
BspACI CCGC 2 cut(s) 21, 326
BspANI GGCC 2 cut(s) 284, 320
BspCNI CTCAG 1 cut(s) 68
BspFNI CGCG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 2 cut(s) 45, 205
BspT107I GGYRCC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 8, 50, 79, 210
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 262, 336
BstACI GRCGYC 1 cut(s) 24
BstAUI TGTACA 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 55
BstDSI CCRYGG 1 cut(s) 261
BstFNI CGCG 1 cut(s) 136
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 4 cut(s) 11, 53, 82, 213
BstMBI GATC 4 cut(s) 8, 50, 79, 210
BstUI CGCG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 3 cut(s) 8, 50, 210
BstYI RGATCY 3 cut(s) 8, 50, 210
Bsu36I CCTNAGG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 284, 320
BtgI CCRYGG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 62, 282
CseI GACGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 88, 106
CviJI RGCY 5 cut(s) 143, 151, 284, 320, 374
CviKI_1 RGCY 5 cut(s) 143, 151, 284, 320, 374
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 1 cut(s) 55
DinI GGCGCC 1 cut(s) 25
DpnI GATC 4 cut(s) 10, 52, 81, 212
DpnII GATC 4 cut(s) 8, 50, 79, 210
EaeI YGGCCR 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 282
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
FaeI CATG 2 cut(s) 91, 109
FaiI YATR 5 cut(s) 89, 107, 366, 387, 389
FatI CATG 2 cut(s) 87, 105
FauI CCCGC 1 cut(s) 319
FauNDI CATATG 1 cut(s) 387
Fnu4HI GCNGC 2 cut(s) 22, 159
Fsp4HI GCNGC 2 cut(s) 22, 159
FspBI CTAG 1 cut(s) 279
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 22, 159
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 2 cut(s) 284, 320
HgaI GACGC 1 cut(s) 93
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 2 cut(s) 91, 109
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 2 cut(s) 102, 255
HphI GGTGA 3 cut(s) 106, 158, 250
Hpy188I TCNGA 3 cut(s) 48, 66, 101
Hpy188III TCNNGA 4 cut(s) 35, 57, 135, 208
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 262, 336
HpyF3I CTNAG 1 cut(s) 55
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 91, 109
HspAI GCGC 1 cut(s) 24
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 4 cut(s) 8, 50, 79, 210
LmnI GCTCC 1 cut(s) 382
LpnPI CCDG 5 cut(s) 42, 129, 188, 205, 228
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 279
MalI GATC 4 cut(s) 10, 52, 81, 212
MboI GATC 4 cut(s) 8, 50, 79, 210
MboII GAAGA 2 cut(s) 342, 371
MflI RGATCY 3 cut(s) 8, 50, 210
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 3 cut(s) 38, 126, 165
MluNI TGGCCA 1 cut(s) 320
Mly113I GGCGCC 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 11, 53, 64
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 320
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 326
MvnI CGCG 1 cut(s) 136
NarI GGCGCC 1 cut(s) 24
NdeI CATATG 1 cut(s) 387
NdeII GATC 4 cut(s) 8, 50, 79, 210
NlaIII CATG 2 cut(s) 91, 109
NlaIV GGNNCC 1 cut(s) 25
NruI TCGCGA 1 cut(s) 136
OliI CACNNNNGTG 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 102, 255
PkrI GCNGC 2 cut(s) 23, 160
PluTI GGCGCC 1 cut(s) 27
PshBI ATTAAT 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 62, 282
PsuI RGATCY 3 cut(s) 8, 50, 210
RruI TCGCGA 1 cut(s) 136
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 22, 159
Sau3AI GATC 4 cut(s) 8, 50, 79, 210
Sau96I GGNCC 2 cut(s) 62, 282
SetI ASST 3 cut(s) 64, 153, 177
SfoI GGCGCC 1 cut(s) 25
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 3 cut(s) 38, 126, 165
SsiI CCGC 2 cut(s) 21, 326
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 262, 336
TaqI TCGA 2 cut(s) 82, 270
TasI AATT 3 cut(s) 38, 126, 165
TatI WGTACW 1 cut(s) 180
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 2 cut(s) 102, 255
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 62
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 1 cut(s) 126
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.