Rh6DG180000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000575
Physical Location & Seq
Forward (+)
31739154 .. 31740840
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG180000.1

Sequence Viewer

Length: 585 bp
ATGACACGGTTAAACACTCGATCAATCCTTTGTGAGTTTGGAATCGCGACGATGGAGGAGACGATGATGTACGAGAACGTGTGGGTGGACGAGGACGTGTTTGTGAACGGTCGCTGCAATCCCAGGCTGTCAGCGTCCGACTCATTTTCTTTTAATGTGCCCTATCCAGAAAAGATCGACAGGGATGCTTGGAATACACAGCTGGTACCGGAATTTGCTAATCTTGGCTTTGTATGCCCATGGTGGAATGAGCATGAAATGGGATGTACAATCAATCCAGCAATAGACATTCCGCGCATGGATGTCGCTATGAGGGCTGAGGAATCTCTTGAAGGTTTCACAACGGGTTTCTCGGCAAAGACGGCATTGAAAATACTGTCGGGCGATTATCGGTTAGTCTTTAGAGACTTTGATGACAAGATTAGTGAGAATTCAGTGTGTGATCGCTTGAACCAGTTTGTTGACAAATATGAAGAATTTGTGAGTAATCTTGCTCTGATGTTCCAGGAAAAGGAGAACAAAAAAAACAGTTTATATCCTTTGTCAAGTACCGTTAGGCAGGCACTTCTTTTCCAGCAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.48

Weight (kDa)

4.6

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 205
AccII CGCG 2 cut(s) 47, 295
AciI CCGC 1 cut(s) 293
AcsI RAATTY 3 cut(s) 212, 430, 476
AfaI GTAC 4 cut(s) 71, 207, 268, 550
AfiI CCNNNNNNNGG 1 cut(s) 511
AflIII ACRYGT 2 cut(s) 78, 96
AgsI TTSAA 3 cut(s) 332, 370, 451
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 2 cut(s) 122, 504
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 53, 399
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 3 cut(s) 212, 430, 476
Asp718I GGTACC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 378
BcgI CGANNNNNNTGC 4 cut(s) 167, 201, 286, 320
BciT130I CCWGG 2 cut(s) 124, 506
BcoDI GTCTC 2 cut(s) 53, 399
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 124, 506
BmgBI CACGTC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 2 cut(s) 124, 506
BmsI GCATC 1 cut(s) 175
Bpu10I CCTNAGC 1 cut(s) 318
BsaJI CCNNGG 2 cut(s) 122, 239
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 454
BseBI CCWGG 2 cut(s) 124, 506
BseDI CCNNGG 2 cut(s) 122, 239
BseGI GGATG 3 cut(s) 190, 269, 307
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 2 cut(s) 47, 295
Bsh1285I CGRYCG 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 2 cut(s) 53, 399
BsmBI CGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 266
Bsp143I GATC 3 cut(s) 20, 174, 442
Bsp19I CCATGG 1 cut(s) 239
Bsp68I TCGCGA 1 cut(s) 47
BspACI CCGC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 2 cut(s) 47, 295
BspLI GGNNCC 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 266
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 122, 239
BssMI GATC 3 cut(s) 20, 174, 442
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 124, 506
Bst4CI ACNGT 5 cut(s) 9, 110, 378, 530, 553
BstAUI TGTACA 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 3 cut(s) 190, 269, 307
BstFNI CGCG 2 cut(s) 47, 295
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 3 cut(s) 23, 177, 445
BstMAI GTCTC 2 cut(s) 53, 399
BstMBI GATC 3 cut(s) 20, 174, 442
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 234, 314, 362
BstNI CCWGG 2 cut(s) 124, 506
BstSCI CCNGG 2 cut(s) 122, 504
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 2 cut(s) 47, 295
BstV1I GCAGC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 239
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 190, 269, 307
BtsIMutI CAGTG 1 cut(s) 441
BtuMI TCGCGA 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 561
CfoI GCGC 1 cut(s) 297
CseI GACGC 1 cut(s) 123
Csp6I GTAC 4 cut(s) 70, 206, 267, 549
CviAII CATG 3 cut(s) 240, 254, 298
CviJI RGCY 4 cut(s) 127, 202, 228, 317
CviKI_1 RGCY 4 cut(s) 127, 202, 228, 317
CviQI GTAC 4 cut(s) 70, 206, 267, 549
DdeI CTNAG 1 cut(s) 318
DpnI GATC 3 cut(s) 22, 176, 444
DpnII GATC 3 cut(s) 20, 174, 442
Eco130I CCWWGG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 122, 504
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 3 cut(s) 243, 257, 301
FaiI YATR 7 cut(s) 235, 241, 255, 299, 311, 471, 535
FatI CATG 3 cut(s) 239, 253, 297
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 3 cut(s) 197, 276, 314
Fsp4HI GCNGC 1 cut(s) 115
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 115
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 123
HhaI GCGC 1 cut(s) 297
Hin1II CATG 3 cut(s) 243, 257, 301
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 3 cut(s) 42, 140, 323
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 3 cut(s) 88, 106, 463
Hpy188I TCNGA 2 cut(s) 139, 498
Hpy188III TCNNGA 3 cut(s) 46, 167, 329
Hpy8I GTNNAC 3 cut(s) 88, 106, 463
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 5 cut(s) 9, 110, 378, 530, 553
HpyCH4IV ACGT 2 cut(s) 78, 96
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 314, 362
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 2 cut(s) 78, 96
Hsp92II CATG 3 cut(s) 243, 257, 301
HspAI GCGC 1 cut(s) 295
KpnI GGTACC 1 cut(s) 209
Kzo9I GATC 3 cut(s) 20, 174, 442
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 175
MaeII ACGT 2 cut(s) 78, 96
MalI GATC 3 cut(s) 22, 176, 444
MboI GATC 3 cut(s) 20, 174, 442
MboII GAAGA 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 3 cut(s) 212, 430, 476
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 4 cut(s) 49, 85, 306, 313
MseI TTAA 2 cut(s) 11, 153
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 124, 506
MvaI CCWGG 2 cut(s) 124, 506
MvnI CGCG 2 cut(s) 47, 295
MwoI GCNNNNNNNGC 3 cut(s) 234, 314, 362
NcoI CCATGG 1 cut(s) 239
NdeII GATC 3 cut(s) 20, 174, 442
NlaIII CATG 3 cut(s) 243, 257, 301
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 332
NruI TCGCGA 1 cut(s) 47
PfeI GAWTC 2 cut(s) 42, 323
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 122, 504
PspGI CCWGG 2 cut(s) 122, 504
PspN4I GGNNCC 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 202
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 4 cut(s) 71, 207, 268, 550
RsaNI GTAC 4 cut(s) 70, 206, 267, 549
SaqAI TTAA 2 cut(s) 11, 153
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 3 cut(s) 20, 174, 442
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 124, 506
SduI GDGCHC 1 cut(s) 162
SetI ASST 4 cut(s) 81, 99, 204, 337
SfaNI GCATC 1 cut(s) 175
Sse9I AATT 3 cut(s) 212, 430, 476
SsiI CCGC 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 122, 504
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 5 cut(s) 9, 110, 378, 530, 553
TaiI ACGT 2 cut(s) 81, 99
TaqI TCGA 2 cut(s) 19, 177
TasI AATT 3 cut(s) 212, 430, 476
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 2 cut(s) 42, 323
Tru1I TTAA 2 cut(s) 11, 153
Tru9I TTAA 2 cut(s) 11, 153
TscAI CASTG 1 cut(s) 441
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 270, 486
TspRI CASTG 1 cut(s) 441
XapI RAATTY 3 cut(s) 212, 430, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.