Rh6CG181100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000575
Physical Location & Seq
Forward (+)
28956566 .. 28964912
8347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG181100.1

Sequence Viewer

Length: 297 bp
ATGGGATGCACAATCGATCCAAAAATAGACATTCCACGCCCGGATGTCTTTCTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGGCAAAGTTGGCATTGAAAGTACTGTCGGGCGATGAGTGGTTAATCACTAGAGACTTTGAAGACGAGATTAGTCAGGTTGCTTCGGTAGAAAATGATCCAGGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTAACCTCCTCTTTAAGCAAGGTTTTTCTTCCATGCTCAAACCTTGAGGCTGTGAGCAGAACATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.52

Weight (kDa)

4.32

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 200
AclWI GGATC 2 cut(s) 11, 185
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 3 cut(s) 112, 155, 215
AjnI CCWGG 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 11, 185
AlwNI CAGNNNCTG 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 1 cut(s) 144
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 2 cut(s) 41, 195
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 41, 195
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 41
Bsa29I ATCGAT 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 195
BseCI ATCGAT 1 cut(s) 15
BseGI GGATG 3 cut(s) 11, 49, 70
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 44, 74
BseRI GAGGAG 1 cut(s) 226
BshVI ATCGAT 1 cut(s) 15
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 16, 190
BspCNI CTCAG 2 cut(s) 45, 73
BspDI ATCGAT 1 cut(s) 15
BspPI GGATC 2 cut(s) 11, 185
BssMI GATC 2 cut(s) 16, 190
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 53, 60
BstF5I GGATG 3 cut(s) 11, 49, 70
BstKTI GATC 2 cut(s) 19, 193
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 16, 190
BstMWI GCNNNNNNNGC 3 cut(s) 65, 74, 104
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 39, 193
BstV2I GAAGAC 1 cut(s) 162
Bsu15I ATCGAT 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 15
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 11, 49, 70
CaiI CAGNNNCTG 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 15
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 261
CviJI RGCY 2 cut(s) 59, 278
CviKI_1 RGCY 2 cut(s) 59, 278
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 53, 60
DpnI GATC 2 cut(s) 18, 192
DpnII GATC 2 cut(s) 16, 190
Eco24I GRGCYC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 61
FaeI CATG 1 cut(s) 264
FaiI YATR 4 cut(s) 75, 83, 262, 295
FatI CATG 1 cut(s) 260
FokI GGATG 3 cut(s) 18, 56, 77
FriOI GRGCYC 1 cut(s) 61
FspBI CTAG 1 cut(s) 144
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 264
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 62, 222
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 74, 104
HpyF3I CTNAG 2 cut(s) 53, 60
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 2 cut(s) 16, 190
LpnPI CCDG 8 cut(s) 47, 54, 72, 155, 180, 207, 207, 240
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 229
MalI GATC 2 cut(s) 18, 192
MboI GATC 2 cut(s) 16, 190
MboII GAAGA 2 cut(s) 167, 248
MhlI GDGCHC 1 cut(s) 61
MnlI CCTC 5 cut(s) 48, 202, 244, 247, 268
MseI TTAA 2 cut(s) 137, 242
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 2 cut(s) 41, 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 65, 74, 104
NciI CCSGG 1 cut(s) 41
NdeII GATC 2 cut(s) 16, 190
NlaIII CATG 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspPI GGNCC 1 cut(s) 224
PspPPI RGGWCCY 1 cut(s) 224
PstNI CAGNNNCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 2 cut(s) 137, 242
Sau3AI GATC 2 cut(s) 16, 190
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 41, 195
SduI GDGCHC 1 cut(s) 61
SetI ASST 7 cut(s) 174, 199, 213, 229, 236, 252, 273
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 39, 193
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 15
TatI WGTACW 1 cut(s) 115
Tru1I TTAA 2 cut(s) 137, 242
Tru9I TTAA 2 cut(s) 137, 242
TspDTI ATGAA 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 224
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.