Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

9179562 .. 9182056

Gene Structure 2495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG062000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGAAGAGGCAGAAGCTGAGTGTTTCTGTGCTCTCGGCGTTTCTCAGTTTCGCCTTTTTGCCGGGATCTGAGGCTCACACCCGGTTGTCCTCCTATCTTCCGAAGGTGATTTTCGGATTTGAAGTTGTGTTTCAGTGTTCAGTTTATGTTTGGAGGTCTGTGATTGTGAAACATTGGTTATGCAGGACGATGAGTATTACTCTCTTAGCTATGAATATACCGGTGATATCGCAGAAATTAGAGGGTGGACATGCTTCAGGATGGAAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGAATGCTTCTCCAGAAAAATCGAAAGGCGGAAAAGATGTTGAAACTGTAGAAGCTGGACCTTCCTCGAGCAAGGATGCTTCTTCCAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGGAGCTGGACCATTAAGCAAGGATGTGTCCCCTCAAACTGATGCAAGAGGTGTAAATGATGCTGAGTCATCAGGAGCTGGACCTTCCTTGAGCAAGGTTGCTTATGTAGAAAATGATCCAAGTGGTGAAAGTGAGGTTGAAACATCAGGACCTGTACCCTCCTCCTTAAGCGAGGTTTTTCTTCCATGCCCAAACCTTGAGGCTATGAGCAGAACATTACAGAGCAAGGATGATCTACCTAGCATGTTCTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

256

Amino Acids

27.43

Weight (kDa)

5.71

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	3 cut(s)	76, 281, 623
AcuI	CTGAAG	3 cut(s)	243, 314, 495
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	1 cut(s)	385
AflII	CTTAAG	1 cut(s)	679
AgeI	ACCGGT	1 cut(s)	223
AgsI	TTSAA	5 cut(s)	125, 299, 368, 434, 653
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	19, 212, 364, 446, 518, 590
AluI	AGCT	6 cut(s)	19, 212, 364, 446, 518, 590
Alw21I	GWGCWC	1 cut(s)	36
AlwI	GGATC	3 cut(s)	76, 281, 623
AlwNI	CAGNNNCTG	4 cut(s)	19, 518, 590, 665
Ama87I	CYCGRG	1 cut(s)	457
ApeKI	GCWGC	2 cut(s)	277, 305
AsiGI	ACCGGT	1 cut(s)	223
AspS9I	GGNCC	4 cut(s)	449, 521, 593, 662
AsuC2I	CCSGG	2 cut(s)	66, 85
AsuHPI	GGTGA	3 cut(s)	121, 238, 650
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	4 cut(s)	449, 521, 593, 662
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	289, 317
BccI	CCATC	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	66, 85
BfaI	CTAG	1 cut(s)	753
BfmI	CTRYAG	1 cut(s)	438
BfrI	CTTAAG	1 cut(s)	679
BisI	GCNGC	2 cut(s)	278, 306
BlsI	GCNGC	2 cut(s)	279, 307
Bme1390I	CCNGG	2 cut(s)	66, 85
Bme18I	GGWCC	4 cut(s)	449, 521, 593, 662
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	4 cut(s)	449, 521, 593, 662
BmrFI	CCNGG	2 cut(s)	66, 85
BmsI	GCATC	4 cut(s)	292, 457, 544, 562
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	276, 622, 731
BpuMI	CCSGG	2 cut(s)	66, 85
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse118I	RCCGGY	1 cut(s)	223
BseGI	GGATG	4 cut(s)	269, 472, 541, 748
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	4 cut(s)	11, 61, 63, 567
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	2 cut(s)	289, 317
BsgI	GTGCAG	1 cut(s)	296
BshTI	ACCGGT	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	3 cut(s)	65, 85, 224
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	400
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	68, 286, 628, 745
BspACI	CCGC	1 cut(s)	420
BspCNI	CTCAG	4 cut(s)	12, 60, 64, 568
BspHI	TCATGA	1 cut(s)	283
BspPI	GGATC	3 cut(s)	76, 281, 623
BspQI	GCTCTTC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	4 cut(s)	68, 286, 628, 745
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	2 cut(s)	2, 317
BstAFI	CTTAAG	1 cut(s)	679
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstDEI	CTNAG	6 cut(s)	20, 47, 72, 208, 384, 576
BstF5I	GGATG	4 cut(s)	269, 472, 541, 748
BstKTI	GATC	4 cut(s)	71, 289, 631, 748
BstMBI	GATC	4 cut(s)	68, 286, 628, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 395
BstNSI	RCATGY	2 cut(s)	257, 760
BstSCI	CCNGG	2 cut(s)	64, 83
BstSFI	CTRYAG	1 cut(s)	438
BstV1I	GCAGC	2 cut(s)	289, 317
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	269, 472, 541, 748
BtsIMutI	CAGTG	1 cut(s)	143
CaiI	CAGNNNCTG	4 cut(s)	19, 518, 590, 665
CciI	TCATGA	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	4 cut(s)	449, 521, 593, 662
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	668
CspAI	ACCGGT	1 cut(s)	223
CviAII	CATG	6 cut(s)	254, 284, 314, 380, 699, 757
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	6 cut(s)	20, 47, 72, 208, 384, 576
DpnI	GATC	4 cut(s)	70, 288, 630, 747
DpnII	GATC	4 cut(s)	68, 286, 628, 745
Eam1104I	CTCTTC	2 cut(s)	2, 317
EarI	CTCTTC	2 cut(s)	2, 317
EciI	GGCGGA	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	231
Eco47I	GGWCC	4 cut(s)	449, 521, 593, 662
Eco57I	CTGAAG	3 cut(s)	243, 314, 495
Eco88I	CYCGRG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	662
EcoRV	GATATC	1 cut(s)	231
FaeI	CATG	6 cut(s)	257, 287, 317, 383, 702, 760
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	6 cut(s)	253, 283, 313, 379, 698, 756
Fnu4HI	GCNGC	2 cut(s)	278, 306
FokI	GGATG	4 cut(s)	276, 479, 548, 755
Fsp4HI	GCNGC	2 cut(s)	278, 306
FspBI	CTAG	1 cut(s)	753
GluI	GCNGC	2 cut(s)	278, 306
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	3 cut(s)	65, 85, 224
HgaI	GACGC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	257, 287, 317, 383, 702, 760
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	3 cut(s)	65, 85, 224
HphI	GGTGA	3 cut(s)	121, 238, 650
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	3 cut(s)	73, 105, 119
Hpy188III	TCNNGA	8 cut(s)	261, 284, 299, 368, 404, 513, 585, 660
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	4 cut(s)	100, 338, 462, 606
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	4 cut(s)	186, 277, 305, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 395
HpyF3I	CTNAG	6 cut(s)	20, 47, 72, 208, 384, 576
Hsp92II	CATG	6 cut(s)	257, 287, 317, 383, 702, 760
Kzo9I	GATC	4 cut(s)	68, 286, 628, 745
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	2 cut(s)	515, 587
Lsp1109I	GCAGC	2 cut(s)	289, 317
LweI	GCATC	4 cut(s)	292, 457, 544, 562
MaeI	CTAG	1 cut(s)	753
MalI	GATC	4 cut(s)	70, 288, 630, 747
MboI	GATC	4 cut(s)	68, 286, 628, 745
MboII	GAAGA	5 cut(s)	19, 92, 334, 465, 686
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	2 cut(s)	239, 343
MlyI	GAGTC	1 cut(s)	587
MseI	TTAA	2 cut(s)	527, 680
MspCI	CTTAAG	1 cut(s)	679
MspI	CCGG	3 cut(s)	65, 85, 224
MspR9I	CCNGG	2 cut(s)	66, 85
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	2 cut(s)	314, 395
NciI	CCSGG	2 cut(s)	66, 85
NdeII	GATC	4 cut(s)	68, 286, 628, 745
NlaIII	CATG	6 cut(s)	257, 287, 317, 383, 702, 760
NmeAIII	GCCGAG	1 cut(s)	17
NspI	RCATGY	2 cut(s)	257, 760
PaeR7I	CTCGAG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	400
PinAI	ACCGGT	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	279, 307
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	662
Psp5II	RGGWCCY	1 cut(s)	662
PspPI	GGNCC	4 cut(s)	449, 521, 593, 662
PspPPI	RGGWCCY	1 cut(s)	662
PspXI	VCTCGAGB	1 cut(s)	457
PstNI	CAGNNNCTG	4 cut(s)	19, 518, 590, 665
PsuI	RGATCY	1 cut(s)	68
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	527, 680
SatI	GCNGC	2 cut(s)	278, 306
Sau3AI	GATC	4 cut(s)	68, 286, 628, 745
Sau96I	GGNCC	4 cut(s)	449, 521, 593, 662
SchI	GAGTC	1 cut(s)	587
ScrFI	CCNGG	2 cut(s)	66, 85
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	4 cut(s)	292, 457, 544, 562
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	457
SinI	GGWCC	4 cut(s)	449, 521, 593, 662
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	5 cut(s)	291, 457, 601, 679, 710
SmoI	CTYRAG	5 cut(s)	291, 457, 601, 679, 710
Sse9I	AATT	2 cut(s)	239, 343
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	64, 83
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	413, 458
TasI	AATT	2 cut(s)	239, 343
Tru1I	TTAA	2 cut(s)	527, 680
Tru9I	TTAA	2 cut(s)	527, 680
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	2 cut(s)	277, 305
TspDTI	ATGAA	2 cut(s)	230, 336
TspRI	CASTG	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	679
VpaK11BI	GGWCC	4 cut(s)	449, 521, 593, 662
XceI	RCATGY	2 cut(s)	257, 760
XhoI	CTCGAG	1 cut(s)	457
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.