Rh6AG182100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000575
Physical Location & Seq
Forward (+)
31897971 .. 31901697
3727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG182100.1

Sequence Viewer

Length: 600 bp
ATGGAGGAGACGATGATGTACGAGAACGTGTGGGTGGACGAGGTGTCAGCGTACGACTCATTTTCTTTTAATGTGCCCAATCCAGAAAAGATCGACAGGGATGCTTGGAGTACACAGCTGGTTCCGGAATTTGCTAAGCTTGGCTTAGTATGCACATGGTGGAATGAGCATGAAATGGGATGCACAATCGATCCAAAAATAGACATTCCACGCCCGGATGTCTTTCTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGGCAAAGTTGGCATTGAAAGTACTGTCGGGCGATGAGTGGTTAATCACTAGAGACTTTGAAGACGAGATTAGTCAGGATCCAGTGCGTGAACGGTTCGAGACTTTTATTTCCAAATATGAAAAATTCGCGAGTAATCTTATGAAGGATGTTGGTCAGCGGTTCCCCTGTGAACTTAAACCTAATGTACCTAATGAACATTCTATCGCTTTTGTGGCAAATGCACGAATATTTGAAATTATGGCGGTTCTCGTGTGGCAAGTAGTTGTGCACGCGGCATTGCATGCAATCACCTTCGAAGAACCTTTGTTCCCTTGTCGCCCTGGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.95

Weight (kDa)

4.64

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 398, 542
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 3 cut(s) 427, 512, 542
AclWI GGATC 3 cut(s) 185, 341, 354
AcsI RAATTY 2 cut(s) 128, 392
AdeI CACNNNGTG 1 cut(s) 159
AfaI GTAC 5 cut(s) 20, 53, 112, 291, 456
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 3 cut(s) 286, 329, 503
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 589
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
AluBI AGCT 2 cut(s) 118, 139
AluI AGCT 2 cut(s) 118, 139
Alw21I GWGCWC 1 cut(s) 540
Alw26I GTCTC 3 cut(s) 2, 315, 362
Alw44I GTGCAC 1 cut(s) 536
AlwI GGATC 3 cut(s) 185, 341, 354
Aor13HI TCCGGA 1 cut(s) 124
ApaLI GTGCAC 1 cut(s) 536
ApoI RAATTY 2 cut(s) 128, 392
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 550
AsuII TTCGAA 1 cut(s) 564
BaeGI GKGCMC 2 cut(s) 78, 540
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 235
BauI CACGAG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 540
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 591
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 2, 315, 362
BfaI CTAG 1 cut(s) 318
BisI GCNGC 1 cut(s) 543
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 544
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 215, 591
BmeRI GACNNNNNGTC 1 cut(s) 43
BmiI GGNNCC 3 cut(s) 123, 348, 431
BmrFI CCNGG 2 cut(s) 215, 591
BmsI GCATC 3 cut(s) 91, 170, 229
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 564
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 589
BsaWI WCCGGW 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 545
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 1 cut(s) 591
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 589
BseGI GGATG 5 cut(s) 106, 185, 223, 244, 421
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 2 cut(s) 218, 248
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 2 cut(s) 78, 540
Bsh1236I CGCG 2 cut(s) 398, 542
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 540
BsiSI CCGG 2 cut(s) 125, 215
BsiWI CGTACG 1 cut(s) 51
BsmAI GTCTC 3 cut(s) 2, 315, 362
BsmBI CGTCTC 1 cut(s) 2
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 3 cut(s) 78, 235, 540
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 3 cut(s) 90, 190, 346
Bsp1720I GCTNAGC 1 cut(s) 135
Bsp68I TCGCGA 1 cut(s) 398
BspACI CCGC 3 cut(s) 427, 512, 542
BspCNI CTCAG 2 cut(s) 219, 247
BspDI ATCGAT 1 cut(s) 189
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 2 cut(s) 398, 542
BspLI GGNNCC 3 cut(s) 123, 348, 431
BspPI GGATC 3 cut(s) 185, 341, 354
BspT104I TTCGAA 1 cut(s) 564
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 3 cut(s) 90, 190, 346
BssSI CACGAG 1 cut(s) 518
Bst2BI CACGAG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 294, 363
BstAPI GCANNNNNTGC 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 540, 552
BstDEI CTNAG 4 cut(s) 135, 145, 227, 234
BstF5I GGATG 5 cut(s) 106, 185, 223, 244, 421
BstFNI CGCG 2 cut(s) 398, 542
BstKTI GATC 3 cut(s) 93, 193, 349
BstMAI GTCTC 3 cut(s) 2, 315, 362
BstMBI GATC 3 cut(s) 90, 190, 346
BstMWI GCNNNNNNNGC 6 cut(s) 150, 239, 248, 278, 482, 551
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 213, 589
BstSLI GKGCMC 2 cut(s) 78, 540
BstUI CGCG 2 cut(s) 398, 542
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu15I ATCGAT 1 cut(s) 189
BsuTUI ATCGAT 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 5 cut(s) 106, 185, 223, 244, 421
BtsIMutI CAGTG 1 cut(s) 357
BtuMI TCGCGA 1 cut(s) 398
Cac8I GCNNGC 2 cut(s) 540, 552
ClaI ATCGAT 1 cut(s) 189
Csp6I GTAC 5 cut(s) 19, 52, 111, 290, 455
CviAII CATG 3 cut(s) 156, 170, 551
CviJI RGCY 4 cut(s) 118, 139, 144, 233
CviKI_1 RGCY 4 cut(s) 118, 139, 144, 233
CviQI GTAC 5 cut(s) 19, 52, 111, 290, 455
DdeI CTNAG 4 cut(s) 135, 145, 227, 234
DpnI GATC 3 cut(s) 92, 192, 348
DpnII GATC 3 cut(s) 90, 190, 346
DraIII CACNNNGTG 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 3 cut(s) 159, 173, 554
FaiI YATR 9 cut(s) 151, 157, 171, 249, 257, 387, 410, 509, 552
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 3 cut(s) 155, 169, 550
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 5 cut(s) 113, 192, 230, 251, 428
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 543
HapII CCGG 2 cut(s) 125, 215
Hin1II CATG 3 cut(s) 159, 173, 554
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 1 cut(s) 56
HpaII CCGG 2 cut(s) 125, 215
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 5 cut(s) 37, 113, 359, 440, 538
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 6 cut(s) 83, 125, 236, 344, 367, 397
Hpy8I GTNNAC 5 cut(s) 37, 113, 359, 440, 538
HpyAV CCTTC 2 cut(s) 406, 571
HpyCH4III ACNGT 2 cut(s) 294, 363
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 6 cut(s) 153, 183, 491, 538, 550, 554
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 239, 248, 278, 482, 551
HpyF3I CTNAG 4 cut(s) 135, 145, 227, 234
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 3 cut(s) 159, 173, 554
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 3 cut(s) 90, 190, 346
LweI GCATC 3 cut(s) 91, 170, 229
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 92, 192, 348
MboI GATC 3 cut(s) 90, 190, 346
MboII GAAGA 2 cut(s) 341, 578
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 78, 235, 540
MluCI AATT 3 cut(s) 128, 392, 504
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 2 cut(s) 34, 222
MroI TCCGGA 1 cut(s) 124
MseI TTAA 3 cut(s) 69, 311, 444
MspA1I CMGCKG 2 cut(s) 118, 427
MspI CCGG 2 cut(s) 125, 215
MspR9I CCNGG 2 cut(s) 215, 591
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 2 cut(s) 398, 542
MwoI GCNNNNNNNGC 6 cut(s) 150, 239, 248, 278, 482, 551
NciI CCSGG 1 cut(s) 215
NdeII GATC 3 cut(s) 90, 190, 346
NlaIII CATG 3 cut(s) 159, 173, 554
NlaIV GGNNCC 3 cut(s) 123, 348, 431
NmeAIII GCCGAG 1 cut(s) 248
NruI TCGCGA 1 cut(s) 398
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 564
PaeI GCATGC 1 cut(s) 554
Pfl23II CGTACG 1 cut(s) 51
PkrI GCNGC 1 cut(s) 544
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspLI CGTACG 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 123, 348, 431
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 118
RruI TCGCGA 1 cut(s) 398
RsaI GTAC 5 cut(s) 20, 53, 112, 291, 456
RsaNI GTAC 5 cut(s) 19, 52, 111, 290, 455
SaqAI TTAA 3 cut(s) 69, 311, 444
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 3 cut(s) 90, 190, 346
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 215, 591
SduI GDGCHC 3 cut(s) 78, 235, 540
SetI ASST 8 cut(s) 30, 45, 120, 141, 451, 460, 563, 574
SfaNI GCATC 3 cut(s) 91, 170, 229
SfuI TTCGAA 1 cut(s) 564
SphI GCATGC 1 cut(s) 554
Sse9I AATT 3 cut(s) 128, 392, 504
SsiI CCGC 3 cut(s) 427, 512, 542
SspI AATATT 1 cut(s) 498
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 213, 589
TaaI ACNGT 2 cut(s) 294, 363
TaiI ACGT 1 cut(s) 30
TaqI TCGA 4 cut(s) 93, 189, 366, 564
TasI AATT 3 cut(s) 128, 392, 504
TatI WGTACW 2 cut(s) 110, 289
TauI GCSGC 1 cut(s) 545
Tru1I TTAA 3 cut(s) 69, 311, 444
Tru9I TTAA 3 cut(s) 69, 311, 444
TscAI CASTG 1 cut(s) 357
TspDTI ATGAA 5 cut(s) 186, 244, 402, 425, 477
TspRI CASTG 1 cut(s) 357
VneI GTGCAC 1 cut(s) 536
XapI RAATTY 2 cut(s) 128, 392
XceI RCATGY 1 cut(s) 554
XspI CTAG 1 cut(s) 318
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.