Rh6AG052700

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000575
Physical Location & Seq
Forward (+)
7720748 .. 7742355
21608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG052700.1

Sequence Viewer

Length: 912 bp
ATGCTAACGATAACAAATCCCCCTGAAGAAAATATCTCATTAGCATATATACCTACTCCTCCTCCTCAGCATAAACAGCCAACCGTGTCACTCCAAGCCACTATGAGACCTCATCATCAACTTCTTCCTCAGCCCTCCAACTCAAACCCACCGCCTCCACCAGTAGTAGAAGACGCCGCAAATCCCACCGTCCACCCGCCGCCGTGTTTACGGGCCTTCCTGGGCCAAGGAAGAAAGGGACCAAGGAAGGTAATGATGATAGTCATTCAAGGTTGCATGGTTTGGGAGAGTCGCGTCAGAATCAATTATATGGATCCAAGGAACAGCCATATCGGTAGAGGTACAAGCAAGCAGGTTAACGTTGAAGAGCTTGAAATACTTTTGGGGGCATACTTTGGGCAAATTGATGGCACCCTAAACATCTATCCACGTGGAGGTTGGAAGAGAAAAATATATGCGACATGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTTATGATCCTCAAGTTCAAGATGCAGCCAACCATCTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGAACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAACCAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCTACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGCGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

303

Amino Acids

33.26

Weight (kDa)

8.9

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 410
AccII CGCG 2 cut(s) 294, 826
AciI CCGC 4 cut(s) 152, 177, 197, 200
AclI AACGTT 1 cut(s) 360
AclWI GGATC 4 cut(s) 308, 321, 497, 658
AcuI CTGAAG 1 cut(s) 45
AcvI CACGTG 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 434, 601
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 6 cut(s) 269, 365, 374, 515, 548, 584
AjnI CCWGG 3 cut(s) 219, 475, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 551, 583
AluBI AGCT 2 cut(s) 370, 580
AluI AGCT 2 cut(s) 370, 580
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 4 cut(s) 308, 321, 497, 658
AoxI GGCC 3 cut(s) 213, 223, 847
ApeKI GCWGC 2 cut(s) 493, 521
AspLEI GCGC 3 cut(s) 671, 826, 828
AspS9I GGNCC 3 cut(s) 213, 223, 239
AvaII GGWCC 1 cut(s) 239
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 410
BanII GRGCYC 1 cut(s) 630
BbrPI CACGTG 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 784
BbvCI CCTCAGC 2 cut(s) 66, 129
BbvI GCAGC 2 cut(s) 505, 533
BccI CCATC 4 cut(s) 401, 474, 537, 704
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 3 cut(s) 221, 477, 703
BcoDI GTCTC 1 cut(s) 100
BfaI CTAG 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 4 cut(s) 177, 200, 494, 522
BlsI GCNGC 4 cut(s) 178, 201, 495, 523
Bme1390I CCNGG 3 cut(s) 221, 477, 703
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 213, 223, 239
BmiI GGNNCC 3 cut(s) 240, 315, 412
BmrFI CCNGG 3 cut(s) 221, 477, 703
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 459
Bpu10I CCTNAGC 3 cut(s) 66, 129, 600
BpuEI CTTGAG 2 cut(s) 492, 768
BsaAI YACGTR 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 895
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 6 cut(s) 220, 226, 242, 317, 702, 850
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 601
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 2 cut(s) 731, 773
Bse8I GATNNNNATC 1 cut(s) 895
BseBI CCWGG 3 cut(s) 221, 477, 703
BseDI CCNNGG 6 cut(s) 220, 226, 242, 317, 702, 850
BseGI GGATG 1 cut(s) 485
BseJI GATNNNNATC 1 cut(s) 895
BseLI CCNNNNNNNGG 2 cut(s) 434, 601
BseMI GCAATG 2 cut(s) 731, 773
BseMII CTCAG 2 cut(s) 80, 143
BseNI ACTGG 1 cut(s) 161
BsePI GCGCGC 1 cut(s) 824
BseRI GAGGAG 3 cut(s) 48, 51, 54
BseXI GCAGC 2 cut(s) 505, 533
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 2 cut(s) 294, 826
BshFI GGCC 3 cut(s) 215, 225, 849
BshNI GGYRCC 1 cut(s) 410
BsiHKAI GWGCWC 1 cut(s) 784
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 434, 601
BsmAI GTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 3 cut(s) 215, 225, 849
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 630, 784
Bsp143I GATC 3 cut(s) 313, 502, 650
BspACI CCGC 4 cut(s) 152, 177, 197, 200
BspANI GGCC 3 cut(s) 215, 225, 849
BspCNI CTCAG 2 cut(s) 79, 142
BspFNI CGCG 2 cut(s) 294, 826
BspLI GGNNCC 3 cut(s) 240, 315, 412
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 308, 321, 497, 658
BspQI GCTCTTC 2 cut(s) 360, 533
BspT107I GGYRCC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 731, 773
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 6 cut(s) 220, 226, 242, 317, 702, 850
BssHII GCGCGC 1 cut(s) 824
BssMI GATC 3 cut(s) 313, 502, 650
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 4 cut(s) 226, 242, 317, 850
Bst2UI CCWGG 3 cut(s) 221, 477, 703
Bst4CI ACNGT 2 cut(s) 85, 190
Bst6I CTCTTC 3 cut(s) 360, 437, 533
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 3 cut(s) 490, 728, 733
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 5 cut(s) 350, 471, 729, 780, 826
BstDEI CTNAG 3 cut(s) 66, 129, 600
BstF5I GGATG 1 cut(s) 485
BstFNI CGCG 2 cut(s) 294, 826
BstHHI GCGC 3 cut(s) 671, 826, 828
BstKTI GATC 3 cut(s) 316, 505, 653
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 313, 502, 650
BstMWI GCNNNNNNNGC 4 cut(s) 76, 490, 728, 733
BstNI CCWGG 3 cut(s) 221, 477, 703
BstNSI RCATGY 3 cut(s) 465, 473, 731
BstSCI CCNGG 3 cut(s) 219, 475, 701
BstUI CGCG 2 cut(s) 294, 826
BstV1I GCAGC 2 cut(s) 505, 533
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 215, 225, 849
BtsCI GGATG 1 cut(s) 485
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 5 cut(s) 350, 471, 729, 780, 826
CfoI GCGC 3 cut(s) 671, 826, 828
Cfr13I GGNCC 3 cut(s) 213, 223, 239
CseI GACGC 3 cut(s) 182, 283, 695
Csp6I GTAC 1 cut(s) 342
CviAII CATG 5 cut(s) 277, 462, 470, 596, 728
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 3 cut(s) 66, 129, 600
DpnI GATC 3 cut(s) 315, 504, 652
DpnII GATC 3 cut(s) 313, 502, 650
DraI TTTAAA 2 cut(s) 810, 895
Eam1104I CTCTTC 3 cut(s) 360, 437, 533
EarI CTCTTC 3 cut(s) 360, 437, 533
Eco130I CCWWGG 4 cut(s) 226, 242, 317, 850
Eco147I AGGCCT 1 cut(s) 849
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 239
Eco57I CTGAAG 1 cut(s) 45
Eco72I CACGTG 1 cut(s) 431
EcoRII CCWGG 3 cut(s) 219, 475, 701
EcoT14I CCWWGG 4 cut(s) 226, 242, 317, 850
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 4 cut(s) 226, 242, 317, 850
FaeI CATG 5 cut(s) 280, 465, 473, 599, 731
FaqI GGGAC 1 cut(s) 252
FatI CATG 5 cut(s) 276, 461, 469, 595, 727
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 177, 200, 494, 522
FokI GGATG 1 cut(s) 492
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 4 cut(s) 177, 200, 494, 522
FspBI CTAG 1 cut(s) 840
GlaI GCGC 3 cut(s) 670, 825, 827
GluI GCNGC 4 cut(s) 177, 200, 494, 522
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 3 cut(s) 215, 225, 849
HgaI GACGC 3 cut(s) 182, 283, 695
HhaI GCGC 3 cut(s) 671, 826, 828
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 5 cut(s) 280, 465, 473, 599, 731
Hin6I GCGC 3 cut(s) 669, 824, 826
HinP1I GCGC 3 cut(s) 669, 824, 826
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 4 cut(s) 289, 300, 617, 871
HpaI GTTAAC 1 cut(s) 358
Hpy166II GTNNAC 3 cut(s) 193, 209, 358
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 2 cut(s) 515, 584
Hpy8I GTNNAC 3 cut(s) 193, 209, 358
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 3 cut(s) 226, 241, 554
HpyCH4III ACNGT 2 cut(s) 85, 190
HpyCH4IV ACGT 2 cut(s) 360, 430
HpyCH4V TGCA 4 cut(s) 276, 493, 521, 731
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 490, 728, 733
HpyF3I CTNAG 3 cut(s) 66, 129, 600
HpySE526I ACGT 2 cut(s) 360, 430
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 5 cut(s) 280, 465, 473, 599, 731
HspAI GCGC 3 cut(s) 669, 824, 826
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 3 cut(s) 313, 502, 650
LguI GCTCTTC 2 cut(s) 360, 533
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 2 cut(s) 505, 533
LweI GCATC 1 cut(s) 508
MaeI CTAG 1 cut(s) 840
MaeII ACGT 2 cut(s) 360, 430
MaeIII GTNAC 1 cut(s) 87
MalI GATC 3 cut(s) 315, 504, 652
MboI GATC 3 cut(s) 313, 502, 650
MboII GAAGA 9 cut(s) 38, 116, 182, 243, 377, 454, 550, 826, 829
MfeI CAATTG 1 cut(s) 834
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 630, 784
MluCI AATT 4 cut(s) 304, 402, 559, 834
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 2 cut(s) 162, 419
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 3 cut(s) 357, 809, 894
MspR9I CCNGG 3 cut(s) 221, 477, 703
MunI CAATTG 1 cut(s) 834
MvaI CCWGG 3 cut(s) 221, 477, 703
MvnI CGCG 2 cut(s) 294, 826
MwoI GCNNNNNNNGC 4 cut(s) 76, 490, 728, 733
NdeII GATC 3 cut(s) 313, 502, 650
NlaIII CATG 5 cut(s) 280, 465, 473, 599, 731
NlaIV GGNNCC 3 cut(s) 240, 315, 412
NmuCI GTSAC 1 cut(s) 87
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 3 cut(s) 465, 473, 731
PaeI GCATGC 2 cut(s) 473, 731
PauI GCGCGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 849
PciI ACATGT 1 cut(s) 461
PciSI GCTCTTC 2 cut(s) 360, 533
PfeI GAWTC 3 cut(s) 300, 617, 871
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 4 cut(s) 178, 201, 495, 523
PleI GAGTC 1 cut(s) 297
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 431
PscI ACATGT 1 cut(s) 461
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 3 cut(s) 219, 475, 701
PspCI CACGTG 1 cut(s) 431
PspGI CCWGG 3 cut(s) 219, 475, 701
PspN4I GGNNCC 3 cut(s) 240, 315, 412
PspPI GGNCC 3 cut(s) 213, 223, 239
PsuI RGATCY 1 cut(s) 313
PteI GCGCGC 1 cut(s) 824
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SapI GCTCTTC 2 cut(s) 360, 533
SaqAI TTAA 3 cut(s) 357, 809, 894
SatI GCNGC 4 cut(s) 177, 200, 494, 522
Sau3AI GATC 3 cut(s) 313, 502, 650
Sau96I GGNCC 3 cut(s) 213, 223, 239
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 3 cut(s) 221, 477, 703
SduI GDGCHC 2 cut(s) 630, 784
SfaNI GCATC 1 cut(s) 508
SinI GGWCC 1 cut(s) 239
SmiI ATTTAAAT 1 cut(s) 895
SmlI CTYRAG 2 cut(s) 507, 783
SmoI CTYRAG 2 cut(s) 507, 783
SphI GCATGC 2 cut(s) 473, 731
Sse9I AATT 4 cut(s) 304, 402, 559, 834
SseBI AGGCCT 1 cut(s) 849
SsiI CCGC 4 cut(s) 152, 177, 197, 200
SspMI CTAG 1 cut(s) 840
StuI AGGCCT 1 cut(s) 849
StyD4I CCNGG 3 cut(s) 219, 475, 701
StyI CCWWGG 4 cut(s) 226, 242, 317, 850
SwaI ATTTAAAT 1 cut(s) 895
TaaI ACNGT 2 cut(s) 85, 190
TaiI ACGT 2 cut(s) 363, 433
TasI AATT 4 cut(s) 304, 402, 559, 834
TauI GCSGC 2 cut(s) 179, 202
TfiI GAWTC 3 cut(s) 300, 617, 871
Tru1I TTAA 3 cut(s) 357, 809, 894
Tru9I TTAA 3 cut(s) 357, 809, 894
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 2 cut(s) 493, 521
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 2 cut(s) 552, 609
VpaK11BI GGWCC 1 cut(s) 239
XceI RCATGY 3 cut(s) 465, 473, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 435
XspI CTAG 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.