Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

5401823 .. 5402122

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGATTCATTTGAGCCTGATGGAAATGGGACAAATGGATCAAATGGAGAGAACGGCGCAAATGTAGAAAACGGCGCAAATGGAGAAAACAGGGCAGATGGAAACGGGGCAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCATGGTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCACTGCTAACTAATAGATTTAAATCTCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

99

Amino Acids

10.39

Weight (kDa)

6.72

Isoelectric Point (pI)

5.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AclWI	GGATC	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	167
AlwI	GGATC	1 cut(s)	46
AoxI	GGCC	1 cut(s)	235
AspLEI	GCGC	3 cut(s)	59, 77, 216
BccI	CCATC	2 cut(s)	14, 92
BceAI	ACGGC	2 cut(s)	70, 88
BfaI	CTAG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse3DI	GCAATG	2 cut(s)	119, 161
Bse8I	GATNNNNATC	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMI	GCAATG	2 cut(s)	119, 161
BshFI	GGCC	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	237
Bsp143I	GATC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	119, 161
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	59, 77, 216
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	263
BtsIMutI	CAGTG	1 cut(s)	263
CfoI	GCGC	3 cut(s)	59, 77, 216
CviAII	CATG	2 cut(s)	116, 167
CviJI	RGCY	2 cut(s)	16, 237
CviKI_1	RGCY	2 cut(s)	16, 237
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
DraI	TTTAAA	2 cut(s)	198, 283
Eco130I	CCWWGG	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	119, 170
FaiI	YATR	2 cut(s)	117, 168
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	2 cut(s)	115, 166
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	3 cut(s)	58, 76, 215
HaeIII	GGCC	1 cut(s)	237
HhaI	GCGC	3 cut(s)	59, 77, 216
Hin1II	CATG	2 cut(s)	119, 170
Hin6I	GCGC	3 cut(s)	57, 75, 214
HinP1I	GCGC	3 cut(s)	57, 75, 214
HinfI	GANTC	2 cut(s)	5, 259
HpyCH4V	TGCA	2 cut(s)	119, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	119, 170
HspAI	GCGC	3 cut(s)	57, 75, 214
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	5 cut(s)	30, 76, 150, 162, 201
MaeI	CTAG	1 cut(s)	228
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MboII	GAAGA	2 cut(s)	214, 217
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	1 cut(s)	227
Mph1103I	ATGCAT	1 cut(s)	121
MseI	TTAA	2 cut(s)	197, 282
MunI	CAATTG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	119, 170
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	119
PceI	AGGCCT	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	5, 259
PflMI	CCANNNNNTGG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	197, 282
Sau3AI	GATC	1 cut(s)	38
SetI	ASST	2 cut(s)	190, 196
SmiI	ATTTAAAT	1 cut(s)	283
Sse9I	AATT	1 cut(s)	222
SseBI	AGGCCT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	237
StyI	CCWWGG	1 cut(s)	238
SwaI	ATTTAAAT	1 cut(s)	283
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	5, 259
Tru1I	TTAA	2 cut(s)	197, 282
Tru9I	TTAA	2 cut(s)	197, 282
TscAI	CASTG	1 cut(s)	270
TspRI	CASTG	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.