Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

16005847 .. 16015494

Gene Structure 9648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG091900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTATGGTGGCTCTGCAACCATGAAAGTTCAAAACCATACAGCAGCTCGTTGTGGATGTCTATGTGGGCATACTCCAGGGTGGCAAGATGTACAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGCTGTGAAGAGCCTTCAGCAAAAGTCCAATTCATTGTTCTCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGTGATAGAAGATCATGCCGAGTTCAACATGCTTCATAAGCTGAAGAGGGGAGACAAAGAAGAGAAATATAAAGTTGAAGTGCACAAGAACGATGAAGGTGCCTACAATCTGAATCAGATGGAGGCACAGCACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

115

Amino Acids

12.99

Weight (kDa)

6.11

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	27 - 74	4.2e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	131, 272
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	5 cut(s)	32, 116, 185, 235, 287
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	3 cut(s)	47, 181, 250
AluI	AGCT	3 cut(s)	47, 181, 250
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	98
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	44, 122
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	56, 134
BccI	CCATC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	255
BisI	GCNGC	2 cut(s)	45, 123
BlsI	GCNGC	2 cut(s)	46, 124
Bme1390I	CCNGG	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	56, 134
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	103, 220
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	103, 220
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	134, 248, 264
BstAUI	TGTACA	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	106, 223
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	103, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 247
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	1 cut(s)	241
BstSCI	CCNGG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	56, 134
BtsCI	GGATG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	6 cut(s)	22, 101, 131, 197, 224, 238
CviJI	RGCY	7 cut(s)	12, 47, 97, 125, 144, 181, 250
CviKI_1	RGCY	7 cut(s)	12, 47, 97, 125, 144, 181, 250
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	2 cut(s)	105, 222
DpnII	GATC	2 cut(s)	103, 220
Eam1104I	CTCTTC	3 cut(s)	134, 248, 264
EarI	CTCTTC	3 cut(s)	134, 248, 264
Eco57I	CTGAAG	2 cut(s)	131, 272
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	6 cut(s)	25, 104, 134, 200, 227, 241
FatI	CATG	6 cut(s)	21, 100, 130, 196, 223, 237
Fnu4HI	GCNGC	2 cut(s)	45, 123
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	45, 123
GluI	GCNGC	2 cut(s)	45, 123
GsuI	CTGGAG	1 cut(s)	60
Hin1II	CATG	6 cut(s)	25, 104, 134, 200, 227, 241
HinfI	GANTC	1 cut(s)	322
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	321, 327
Hpy188III	TCNNGA	3 cut(s)	101, 116, 185
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	155, 299
HpyCH4V	TGCA	3 cut(s)	17, 122, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 247
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	6 cut(s)	25, 104, 134, 200, 227, 241
Kzo9I	GATC	2 cut(s)	103, 220
LguI	GCTCTTC	1 cut(s)	134
LpnPI	CCDG	2 cut(s)	63, 90
Lsp1109I	GCAGC	2 cut(s)	56, 134
LweI	GCATC	1 cut(s)	109
MalI	GATC	2 cut(s)	105, 222
MboI	GATC	2 cut(s)	103, 220
MboII	GAAGA	4 cut(s)	151, 230, 265, 281
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	5 cut(s)	108, 117, 202, 249, 325
MseI	TTAA	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	131, 247
NdeII	GATC	2 cut(s)	103, 220
NlaIII	CATG	6 cut(s)	25, 104, 134, 200, 227, 241
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	253
NspI	RCATGY	1 cut(s)	241
PagI	TCATGA	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	46, 124
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	2 cut(s)	45, 123
Sau3AI	GATC	2 cut(s)	103, 220
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	5 cut(s)	49, 183, 213, 252, 310
SfaNI	GCATC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	76
TasI	AATT	1 cut(s)	160
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TseI	GCWGC	2 cut(s)	44, 122
TspDTI	ATGAA	4 cut(s)	38, 153, 233, 318
VneI	GTGCAC	1 cut(s)	290
XceI	RCATGY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.