Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

19107799 .. 19109015

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG090100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAGCCTCACCTTTCTGAATATATGGGTGGGCATGCTCCAGGGTGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATTCAGCCAACCATGCTGTGAATAGCCTTCAGCAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGTGATGGAAGATCATGCCAAGTTCAACATGCTTCTTCAGCTGAAGAGGGGAGACAAAGAAGAGAAATATAAAGTCGAAGTACACAAGAACAATGAAGGTGCCTACAATCTGAATCAGATGGACGCGCAGGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

103

Amino Acids

11.81

Weight (kDa)

5.54

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	299
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	3 cut(s)	95, 194, 236
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	80, 149, 199
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	145, 214
AluI	AGCT	2 cut(s)	145, 214
Alw26I	GTCTC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	172, 286
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	219
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	24
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	67, 184
BspFNI	CGCG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	67, 184
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	212, 228
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	70, 187
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	67, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 95, 211
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	2 cut(s)	38, 205
BstSCI	CCNGG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	36
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	1 cut(s)	301
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	6 cut(s)	35, 65, 95, 161, 188, 202
CviJI	RGCY	6 cut(s)	7, 61, 89, 108, 145, 214
CviKI_1	RGCY	6 cut(s)	7, 61, 89, 108, 145, 214
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	2 cut(s)	69, 186
DpnII	GATC	2 cut(s)	67, 184
Eam1104I	CTCTTC	2 cut(s)	212, 228
EarI	CTCTTC	2 cut(s)	212, 228
Eco57I	CTGAAG	3 cut(s)	95, 194, 236
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	6 cut(s)	38, 68, 98, 164, 191, 205
FatI	CATG	6 cut(s)	34, 64, 94, 160, 187, 201
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	6 cut(s)	38, 68, 98, 164, 191, 205
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	3 cut(s)	83, 286, 305
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	19, 285, 291
Hpy188III	TCNNGA	3 cut(s)	65, 80, 149
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	119, 263
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 95, 211
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	38, 68, 98, 164, 191, 205
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	67, 184
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	27, 54, 287
Lsp1109I	GCAGC	1 cut(s)	70
MalI	GATC	2 cut(s)	69, 186
MboI	GATC	2 cut(s)	67, 184
MboII	GAAGA	4 cut(s)	194, 200, 229, 245
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	5 cut(s)	18, 72, 81, 166, 213
MspA1I	CMGCKG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	55, 95, 211
NdeII	GATC	2 cut(s)	67, 184
NlaIII	CATG	6 cut(s)	38, 68, 98, 164, 191, 205
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	2 cut(s)	38, 205
PaeI	GCATGC	1 cut(s)	38
PagI	TCATGA	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	83, 286
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	214
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	67, 184
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	42
SetI	ASST	5 cut(s)	15, 147, 177, 216, 274
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	40
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	124
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	2 cut(s)	83, 286
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	17, 117, 282
XceI	RCATGY	2 cut(s)	38, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.