RchiOBHm_Chr6g0272711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000575
Physical Location & Seq
Forward (+)
33109632 .. 33111827
2196 bp
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UTR
Exon/CDS
Intron
PRQ24467

Sequence Viewer

Length: 408 bp
ATGGGATGTACAATCAATCCAGCAATAGACATTCCGCGCATGGATGTCGCTATGAGGGCTGAGGAATCTCTTGAAGGTTTCACAACGGGTTTCTCGGCAAAGACGGCATTGAAAATACTGTCGGGCGATTATCGGTTAGTCTTTAGAGACTTTGATGACAAGATTAGTGAGAATTCAGTGTGTGATCGCTTGAACCAGTTTGTTGACAAATATGAAGAATTTATGCAGGTGGTTGGTCAGCAGTTCCCCTGTGAAATTAAACATAATGAACATTGTATTGCTATCGTGGCAAATGCACAAATATGTAGTATTATGGCGGATCTCGTGTGGGAAGTAGTTATTTCCGATAATTATGATGTTCAACAAAAGCTCGAAAGTATGTTGGGGTTTTATGAGGAGATTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.37

Weight (kDa)

4.39

Isoelectric Point (pI)

26.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccII CGCG 1 cut(s) 37
AciI CCGC 2 cut(s) 35, 317
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 2 cut(s) 172, 218
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 4 cut(s) 74, 112, 193, 362
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 1 cut(s) 327
ApoI RAATTY 2 cut(s) 172, 218
AspLEI GCGC 1 cut(s) 39
BauI CACGAG 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BcoDI GTCTC 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 11, 49
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 141
Bsp1407I TGTACA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 184, 319
BspACI CCGC 2 cut(s) 35, 317
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 8
BsrI ACTGG 1 cut(s) 196
BssMI GATC 2 cut(s) 184, 319
BssSI CACGAG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 120
BstAUI TGTACA 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 11, 49
BstFNI CGCG 1 cut(s) 37
BstHHI GCGC 1 cut(s) 39
BstKTI GATC 2 cut(s) 187, 322
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 184, 319
BstMWI GCNNNNNNNGC 3 cut(s) 56, 104, 287
BstUI CGCG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsCI GGATG 2 cut(s) 11, 49
BtsIMutI CAGTG 1 cut(s) 183
BveI ACCTGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 40
CviJI RGCY 2 cut(s) 59, 370
CviKI_1 RGCY 2 cut(s) 59, 370
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 186, 321
DpnII GATC 2 cut(s) 184, 319
EciI GGCGGA 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 1 cut(s) 43
FatI CATG 1 cut(s) 39
FokI GGATG 2 cut(s) 18, 56
GlaI GCGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 2 cut(s) 71, 405
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 120
HpyCH4V TGCA 2 cut(s) 226, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 104, 287
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 1 cut(s) 37
Kzo9I GATC 2 cut(s) 184, 319
LpnPI CCDG 4 cut(s) 33, 209, 212, 262
MalI GATC 2 cut(s) 186, 321
MboI GATC 2 cut(s) 184, 319
MboII GAAGA 1 cut(s) 227
MflI RGATCY 1 cut(s) 319
MluCI AATT 4 cut(s) 172, 218, 255, 349
MnlI CCTC 3 cut(s) 48, 55, 388
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 301
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 3 cut(s) 56, 104, 287
NdeII GATC 2 cut(s) 184, 319
NlaIII CATG 1 cut(s) 43
NmeAIII GCCGAG 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 65
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 301
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 2 cut(s) 184, 319
SetI ASST 3 cut(s) 79, 231, 372
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 4 cut(s) 172, 218, 255, 349
SsiI CCGC 2 cut(s) 35, 317
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 372
TasI AATT 4 cut(s) 172, 218, 255, 349
TatI WGTACW 1 cut(s) 8
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 228, 282
TspRI CASTG 1 cut(s) 183
XapI RAATTY 2 cut(s) 172, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.