RLG00000030504

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000575
Physical Location & Seq
Forward (+)
62648006 .. 62648734
729 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030504

Sequence Viewer

Length: 729 bp
ATGGACGAGATAATGATGTACGAGGATGTGTGGGTGGACGACGACGTGTTTGTGAACAGCCGCTGCAATCCCAAGGTGTCAGCGTCCGACTCATTTTCTTTTAATGTGCCCTATCCAGAAAAGATCGACAGCGATGCTTGGAATACACAGCTGGTACCTGAATGTGCTAAGCTTGGCTTCGTATGCACATGGTGGAATGAGCATGAAATGGGATTTACAATTGATCCAACAATAGACATTCCGCGCTTGGATGTCGCTAGGAGGGCTGAGAATTCTCTTGATGCTTTCATAACGGGTTTCTCGGCAAAGACGGCATTGAAAGTACTGTCGGGCGATTATGGGTTAATCTTTAGAGACTTTGAAGACAAGATTAGTGAGAATCAAGTGCGTGATCGCTTCAACCAGTTTGTTGACAAATATGAAGAATTCATGAAGGAGGTTGGTCAGCGGTTCCCCTGTGAAATTAAACATAATGAACATTGTATTGCTATTGTAGCAAATGCACAAATATGTAGTATTATGGCGGGTCTCGTGTGGGAAGAAGTTATGTTCGATAATTCTGATGTTCAACAAGAGCTCAAAAGTATGTTGGAGTTTTATGAGGGGCTTTCTGGATTTGAGCCTTCCGGATTTGAACATAATCCATACACTGATTTGGGGCCTGGACATGATGATATGATGGAACCAAGCAAATCACTGAATGATCAAATAGGCGAACTACAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.78

Weight (kDa)

4.29

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 626
AciI CCGC 4 cut(s) 61, 242, 448, 524
AclWI GGATC 1 cut(s) 218
AcsI RAATTY 2 cut(s) 271, 425
AdeI CACNNNGTG 1 cut(s) 192
AfaI GTAC 3 cut(s) 20, 156, 324
AflIII ACRYGT 1 cut(s) 45
AgsI TTSAA 5 cut(s) 319, 362, 400, 569, 635
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 1 cut(s) 661
AluBI AGCT 3 cut(s) 151, 172, 577
AluI AGCT 3 cut(s) 151, 172, 577
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 348, 533
AlwI GGATC 1 cut(s) 218
AlwNI CAGNNNCTG 1 cut(s) 63
Aor13HI TCCGGA 1 cut(s) 626
AoxI GGCC 1 cut(s) 659
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 271, 425
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
Asp718I GGTACC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 659
BaeGI GKGCMC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 579
BauI CACGAG 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 673
BceAI ACGGC 1 cut(s) 327
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 1 cut(s) 663
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 348, 533
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 719
BisI GCNGC 2 cut(s) 61, 64
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 2 cut(s) 62, 65
BmcAI AGTACT 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 663
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 4 cut(s) 156, 452, 660, 684
BmrFI CCNGG 1 cut(s) 663
BmsI GCATC 2 cut(s) 124, 271
BpiI GAAGAC 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 626
Bse1I ACTGG 1 cut(s) 403
BseAI TCCGGA 1 cut(s) 626
BseBI CCWGG 1 cut(s) 663
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 31, 256
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 661
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 579
BsiSI CCGG 1 cut(s) 627
BsmAI GTCTC 2 cut(s) 348, 533
BsnI GGCC 1 cut(s) 661
Bso31I GGTCTC 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 111, 579
Bsp13I TCCGGA 1 cut(s) 626
Bsp143I GATC 4 cut(s) 123, 223, 391, 703
Bsp1720I GCTNAGC 1 cut(s) 168
BspACI CCGC 4 cut(s) 61, 242, 448, 524
BspANI GGCC 1 cut(s) 661
BspCNI CTCAG 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 626
BspFNI CGCG 1 cut(s) 244
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 156, 452, 660, 684
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 533
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 4 cut(s) 123, 223, 391, 703
BssSI CACGAG 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 168, 267
BstF5I GGATG 2 cut(s) 31, 256
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 4 cut(s) 126, 226, 394, 706
BstMAI GTCTC 2 cut(s) 348, 533
BstMBI GATC 4 cut(s) 123, 223, 391, 703
BstMWI GCNNNNNNNGC 4 cut(s) 183, 263, 311, 494
BstNI CCWGG 1 cut(s) 663
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 719
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 369
BsuRI GGCC 1 cut(s) 661
BtgZI GCGATG 1 cut(s) 147
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 2 cut(s) 31, 256
BtsIMutI CAGTG 2 cut(s) 648, 695
CaiI CAGNNNCTG 1 cut(s) 63
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 659
CseI GACGC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 19, 155, 323
CviAII CATG 4 cut(s) 189, 203, 430, 668
CviJI RGCY 9 cut(s) 60, 151, 172, 177, 266, 577, 607, 622, 661
CviKI_1 RGCY 9 cut(s) 60, 151, 172, 177, 266, 577, 607, 622, 661
CviQI GTAC 3 cut(s) 19, 155, 323
DdeI CTNAG 2 cut(s) 168, 267
DpnI GATC 4 cut(s) 125, 225, 393, 705
DpnII GATC 4 cut(s) 123, 223, 391, 703
DraIII CACNNNGTG 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 577
Eco130I CCWWGG 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 577
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 659
EcoRI GAATTC 2 cut(s) 271, 425
EcoRII CCWGG 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 192, 206, 433, 671
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 4 cut(s) 188, 202, 429, 667
FauI CCCGC 1 cut(s) 517
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 2 cut(s) 61, 64
FokI GGATG 2 cut(s) 38, 263
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 2 cut(s) 61, 64
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 245
GluI GCNGC 2 cut(s) 61, 64
HaeIII GGCC 1 cut(s) 661
HapII CCGG 1 cut(s) 627
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 192, 206, 433, 671
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 2 cut(s) 89, 379
HpaII CCGG 1 cut(s) 627
Hpy166II GTNNAC 3 cut(s) 37, 55, 412
Hpy188I TCNGA 2 cut(s) 88, 562
Hpy188III TCNNGA 5 cut(s) 116, 278, 430, 612, 627
Hpy8I GTNNAC 3 cut(s) 37, 55, 412
Hpy99I CGWCG 2 cut(s) 44, 47
HpyAV CCTTC 2 cut(s) 427, 633
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 66, 186, 503
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 263, 311, 494
HpyF3I CTNAG 2 cut(s) 168, 267
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 4 cut(s) 192, 206, 433, 671
HspAI GCGC 1 cut(s) 244
Kpn2I TCCGGA 1 cut(s) 626
KpnI GGTACC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 4 cut(s) 123, 223, 391, 703
LpnPI CCDG 9 cut(s) 129, 137, 171, 416, 469, 597, 640, 648, 675
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 124, 271
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 45
MalI GATC 4 cut(s) 125, 225, 393, 705
MboI GATC 4 cut(s) 123, 223, 391, 703
MboII GAAGA 3 cut(s) 374, 434, 551
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 2 cut(s) 111, 579
MluCI AATT 5 cut(s) 219, 271, 425, 462, 556
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 3 cut(s) 111, 251, 570
MnlI CCTC 4 cut(s) 16, 255, 430, 595
MroI TCCGGA 1 cut(s) 626
MseI TTAA 3 cut(s) 102, 344, 465
MslI CAYNNNNRTG 1 cut(s) 508
MspA1I CMGCKG 3 cut(s) 63, 151, 448
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 1 cut(s) 663
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 663
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 183, 263, 311, 494
NdeII GATC 4 cut(s) 123, 223, 391, 703
NlaIII CATG 4 cut(s) 192, 206, 433, 671
NlaIV GGNNCC 4 cut(s) 156, 452, 660, 684
NmeAIII GCCGAG 1 cut(s) 281
PagI TCATGA 1 cut(s) 429
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 2 cut(s) 62, 65
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspN4I GGNNCC 4 cut(s) 156, 452, 660, 684
PspPI GGNCC 1 cut(s) 659
PstNI CAGNNNCTG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 3 cut(s) 20, 156, 324
RsaNI GTAC 3 cut(s) 19, 155, 323
RseI CAYNNNNRTG 1 cut(s) 508
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 3 cut(s) 102, 344, 465
SatI GCNGC 2 cut(s) 61, 64
Sau3AI GATC 4 cut(s) 123, 223, 391, 703
Sau96I GGNCC 1 cut(s) 659
ScaI AGTACT 1 cut(s) 324
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 2 cut(s) 111, 579
SetI ASST 7 cut(s) 48, 78, 153, 160, 174, 441, 579
SfaNI GCATC 2 cut(s) 124, 271
SfcI CTRYAG 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 508
Sse9I AATT 5 cut(s) 219, 271, 425, 462, 556
SsiI CCGC 4 cut(s) 61, 242, 448, 524
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 661
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 327
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 126, 552
TasI AATT 5 cut(s) 219, 271, 425, 462, 556
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 3 cut(s) 102, 344, 465
Tru9I TTAA 3 cut(s) 102, 344, 465
TscAI CASTG 2 cut(s) 655, 702
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 6 cut(s) 219, 277, 418, 435, 446, 489
TspRI CASTG 2 cut(s) 655, 702
XapI RAATTY 2 cut(s) 271, 425
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.