Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

3560839 .. 3564848

Gene Structure 4010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG023100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTTATGCAGGACGATGAGCATGACATGGATATTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGTGCTGATTTTTCTGATTGATCAGAAAAAATACAGTGAGGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGACGCAGCCAACCATGTTTTGAAGAGCCTTCAACAAAAGTCCAATTCATTATTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAAATGGGGCAGAGAATGCATTGCCACCCCCACCCCATGTTATCCCTCCAGATGTTGTTCCATTGCATGCTCCGACAGATATTACACCTGAACCTTTTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

183

Amino Acids

20.17

Weight (kDa)

4.93

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_PSMD3_N	PF25573	9 - 51	8e-07	PSMD3-like, N-terminal TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	176, 328
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	4 cut(s)	194, 217, 227, 263
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	88, 259
AluI	AGCT	2 cut(s)	88, 259
AlwI	GGATC	2 cut(s)	176, 328
AoxI	GGCC	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	172, 200
AspLEI	GCGC	2 cut(s)	341, 468
BanII	GRGCYC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	184, 212
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	2 cut(s)	89, 480
BisI	GCNGC	2 cut(s)	173, 201
BlsI	GCNGC	2 cut(s)	174, 202
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	138, 396
Bpu10I	CCTNAGC	2 cut(s)	84, 279
BpuEI	CTTGAG	2 cut(s)	42, 171
BsaBI	GATNNNNATC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse3DI	GCAATG	2 cut(s)	383, 425
Bse8I	GATNNNNATC	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	2 cut(s)	383, 425
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	184, 212
BsgI	GTGCAG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	489
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	130, 181, 320
BspANI	GGCC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	153
BspPI	GGATC	2 cut(s)	176, 328
BspQI	GCTCTTC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	383, 425
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	3 cut(s)	130, 181, 320
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	212
BstAPI	GCANNNNNTGC	3 cut(s)	50, 169, 380
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	2 cut(s)	84, 279
BstF5I	GGATG	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	341, 468
BstKTI	GATC	3 cut(s)	133, 184, 323
BstMBI	GATC	3 cut(s)	130, 181, 320
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 169, 380
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	2 cut(s)	77, 434
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	184, 212
BsuRI	GGCC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	341, 468
CseI	GACGC	2 cut(s)	206, 365
CviAII	CATG	8 cut(s)	23, 28, 74, 179, 209, 275, 401, 431
CviJI	RGCY	9 cut(s)	88, 152, 175, 203, 222, 259, 290, 307, 489
CviKI_1	RGCY	9 cut(s)	88, 152, 175, 203, 222, 259, 290, 307, 489
DdeI	CTNAG	2 cut(s)	84, 279
DpnI	GATC	3 cut(s)	132, 183, 322
DpnII	GATC	3 cut(s)	130, 181, 320
DraI	TTTAAA	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	489
Eco24I	GRGCYC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	8 cut(s)	26, 31, 77, 182, 212, 278, 404, 434
FatI	CATG	8 cut(s)	22, 27, 73, 178, 208, 274, 400, 430
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	173, 201
FokI	GGATG	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	173, 201
FspBI	CTAG	2 cut(s)	89, 480
GlaI	GCGC	2 cut(s)	340, 467
GluI	GCNGC	2 cut(s)	173, 201
GsuI	CTGGAG	2 cut(s)	138, 396
HaeIII	GGCC	1 cut(s)	489
HgaI	GACGC	2 cut(s)	206, 365
HhaI	GCGC	2 cut(s)	341, 468
Hin1II	CATG	8 cut(s)	26, 31, 77, 182, 212, 278, 404, 434
Hin6I	GCGC	2 cut(s)	339, 466
HinP1I	GCGC	2 cut(s)	339, 466
HinfI	GANTC	2 cut(s)	296, 511
Hpy188I	TCNGA	3 cut(s)	126, 135, 438
Hpy188III	TCNNGA	4 cut(s)	179, 194, 263, 413
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	5 cut(s)	10, 44, 172, 383, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 169, 380
HpyF3I	CTNAG	2 cut(s)	84, 279
Hsp92II	CATG	8 cut(s)	26, 31, 77, 182, 212, 278, 404, 434
HspAI	GCGC	2 cut(s)	339, 466
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 181, 320
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	2 cut(s)	157, 439
LpnPI	CCDG	6 cut(s)	95, 96, 141, 168, 426, 465
Lsp1109I	GCAGC	2 cut(s)	184, 212
MaeI	CTAG	2 cut(s)	89, 480
MalI	GATC	3 cut(s)	132, 183, 322
MboI	GATC	3 cut(s)	130, 181, 320
MboII	GAAGA	1 cut(s)	229
MfeI	CAATTG	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	238, 474
MmeI	TCCRAC	1 cut(s)	461
MnlI	CCTC	8 cut(s)	88, 142, 186, 195, 280, 420, 479, 525
Mph1103I	ATGCAT	1 cut(s)	385
MseI	TTAA	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	50, 169, 380
NdeII	GATC	3 cut(s)	130, 181, 320
NlaIII	CATG	8 cut(s)	26, 31, 77, 182, 212, 278, 404, 434
NlaIV	GGNNCC	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	385
NspI	RCATGY	2 cut(s)	77, 434
PaeI	GCATGC	1 cut(s)	434
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	489
PciSI	GCTCTTC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	296, 511
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	174, 202
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	2 cut(s)	173, 201
Sau3AI	GATC	3 cut(s)	130, 181, 320
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	4 cut(s)	90, 261, 454, 460
SmiI	ATTTAAAT	1 cut(s)	535
SmlI	CTYRAG	2 cut(s)	57, 186
SmoI	CTYRAG	2 cut(s)	57, 186
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	2 cut(s)	238, 474
SseBI	AGGCCT	1 cut(s)	489
SspMI	CTAG	2 cut(s)	89, 480
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	490
SwaI	ATTTAAAT	1 cut(s)	535
TaaI	ACNGT	1 cut(s)	146
TasI	AATT	2 cut(s)	238, 474
TfiI	GAWTC	2 cut(s)	296, 511
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	2 cut(s)	172, 200
TspDTI	ATGAA	2 cut(s)	231, 288
TspRI	CASTG	1 cut(s)	151
XceI	RCATGY	2 cut(s)	77, 434
XspI	CTAG	2 cut(s)	89, 480
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.