Rh6BG168800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000575
Physical Location & Seq
Forward (+)
27798754 .. 27801105
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG168800.1

Sequence Viewer

Length: 672 bp
ATGGACGAGACGATGATGTACGAGAACGGGTGGGTGGACGAGGACGTGTTTGTGAACGGTCGCTGCAATCCCAGGTTGTCAGCGTCCGACTCATTTTCTTTTAATGTGCCCTATCCAGAAAAGATCGACAGGGATGCTTGGAATACACAGCTGGTACCGGAATTTGCTAATCTTGGCTTTTTATGCACATGTTGGAATGAGCATGAAATGGGATGTACAATCAATCCAGCAATGGACATTCCGCGCATGGATGTCGCTGTGAGGGCTGAGGAGTCTCTTGAAGCTTTCACAACGGGTTTCTCGGCAAAGACGGCATTGAAAATACTGTCGGGCGATTATCGGTTAGTCTTTAGAGACTTTGATGACAAGATTAGTGAGAATTCAGCGTGTGATCGCTTGAACCAGTTTGTTGAGAAATACGAAGAATTTATGCAGGTGGTTGGTCAGGTGGTTGGTCAGCAGTTCCCCTGTGAAATTAAACATAATGAACATTGTATTGCTATCGTGGCAAATGCACAAATATGTACTATTATGGCGGATCTCGTGTGGGAAGTAGTTTCCGATAATTATGATGTTCAACAAAGGCTCGAAAGTATGTTGGGGTTTTTTGAGGAGCTTTCCGGATTTGAACATAATCCATACACTGATTCAGGGCCTGGACATGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.39

Weight (kDa)

4.29

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 424
Acc36I ACCTGC 1 cut(s) 424
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 2 cut(s) 242, 536
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 3 cut(s) 161, 379, 425
AfaI GTAC 4 cut(s) 20, 156, 217, 526
AflIII ACRYGT 2 cut(s) 45, 188
AgsI TTSAA 5 cut(s) 281, 319, 400, 578, 629
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 71, 655
AluBI AGCT 3 cut(s) 151, 284, 616
AluI AGCT 3 cut(s) 151, 284, 616
Alw26I GTCTC 3 cut(s) 2, 279, 348
AlwI GGATC 1 cut(s) 546
AlwNI CAGNNNCTG 1 cut(s) 656
Aor13HI TCCGGA 1 cut(s) 620
AoxI GGCC 1 cut(s) 653
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 3 cut(s) 161, 379, 425
Asp718I GGTACC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 154
BauI CACGAG 1 cut(s) 542
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 50
BccI CCATC 1 cut(s) 659
BceAI ACGGC 1 cut(s) 327
BcgI CGANNNNNNTGC 4 cut(s) 116, 150, 235, 269
BciT130I CCWGG 2 cut(s) 73, 657
BcoDI GTCTC 3 cut(s) 2, 279, 348
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 2 cut(s) 73, 657
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 2 cut(s) 73, 657
BmsI GCATC 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 71
BsaWI WCCGGW 2 cut(s) 157, 620
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 2 cut(s) 73, 657
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 3 cut(s) 139, 218, 256
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 2 cut(s) 284, 626
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 655
BshNI GGYRCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 61
BsiSI CCGG 2 cut(s) 158, 621
BsmAI GTCTC 3 cut(s) 2, 279, 348
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 620
Bsp1407I TGTACA 1 cut(s) 215
Bsp143I GATC 3 cut(s) 123, 391, 538
BspACI CCGC 2 cut(s) 242, 536
BspANI GGCC 1 cut(s) 655
BspCNI CTCAG 1 cut(s) 259
BspEI TCCGGA 1 cut(s) 620
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 424
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 3 cut(s) 123, 391, 538
BssSI CACGAG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 2 cut(s) 73, 657
Bst4CI ACNGT 2 cut(s) 59, 327
BstAUI TGTACA 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 139, 218, 256
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 126, 394, 541
BstMAI GTCTC 3 cut(s) 2, 279, 348
BstMBI GATC 3 cut(s) 123, 391, 538
BstMCI CGRYCG 1 cut(s) 61
BstMWI GCNNNNNNNGC 4 cut(s) 183, 263, 311, 506
BstNI CCWGG 2 cut(s) 73, 657
BstNSI RCATGY 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 71, 655
BstSLI GKGCMC 1 cut(s) 111
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 655
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 139, 218, 256
BtsIMutI CAGTG 1 cut(s) 642
BveI ACCTGC 1 cut(s) 424
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 653
CseI GACGC 1 cut(s) 72
Csp6I GTAC 4 cut(s) 19, 155, 216, 525
CviAII CATG 4 cut(s) 189, 203, 247, 662
CviJI RGCY 7 cut(s) 151, 177, 266, 284, 586, 616, 655
CviKI_1 RGCY 7 cut(s) 151, 177, 266, 284, 586, 616, 655
CviQI GTAC 4 cut(s) 19, 155, 216, 525
DdeI CTNAG 1 cut(s) 267
DpnI GATC 3 cut(s) 125, 393, 540
DpnII GATC 3 cut(s) 123, 391, 538
EciI GGCGGA 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 71, 655
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 192, 206, 250, 665
FatI CATG 4 cut(s) 188, 202, 246, 661
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 3 cut(s) 146, 225, 263
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 655
HapII CCGG 2 cut(s) 158, 621
HgaI GACGC 1 cut(s) 72
HhaI GCGC 1 cut(s) 246
Hin1II CATG 4 cut(s) 192, 206, 250, 665
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 3 cut(s) 89, 272, 647
HpaII CCGG 2 cut(s) 158, 621
Hpy166II GTNNAC 2 cut(s) 37, 55
Hpy188I TCNGA 2 cut(s) 88, 562
Hpy188III TCNNGA 3 cut(s) 116, 278, 621
Hpy8I GTNNAC 2 cut(s) 37, 55
HpyCH4III ACNGT 2 cut(s) 59, 327
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 66, 186, 433, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 263, 311, 506
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 4 cut(s) 192, 206, 250, 665
HspAI GCGC 1 cut(s) 244
Kpn2I TCCGGA 1 cut(s) 620
KpnI GGTACC 1 cut(s) 158
Kzo9I GATC 3 cut(s) 123, 391, 538
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 45
MalI GATC 3 cut(s) 125, 393, 540
MboI GATC 3 cut(s) 123, 391, 538
MboII GAAGA 1 cut(s) 434
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 5 cut(s) 161, 379, 425, 474, 565
MlyI GAGTC 2 cut(s) 83, 281
MmeI TCCRAC 2 cut(s) 111, 173
MnlI CCTC 4 cut(s) 34, 255, 262, 604
MroI TCCGGA 1 cut(s) 620
MseI TTAA 2 cut(s) 102, 477
MslI CAYNNNNRTG 1 cut(s) 520
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 2 cut(s) 158, 621
MspR9I CCNGG 2 cut(s) 73, 657
MvaI CCWGG 2 cut(s) 73, 657
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 183, 263, 311, 506
NdeII GATC 3 cut(s) 123, 391, 538
NlaIII CATG 4 cut(s) 192, 206, 250, 665
NlaIV GGNNCC 1 cut(s) 156
NmeAIII GCCGAG 1 cut(s) 281
NspI RCATGY 1 cut(s) 192
PaqCI CACCTGC 1 cut(s) 424
PciI ACATGT 1 cut(s) 188
PfeI GAWTC 1 cut(s) 647
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 2 cut(s) 83, 280
PpsI GAGTC 2 cut(s) 83, 280
PscI ACATGT 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 71, 655
PspGI CCWGG 2 cut(s) 71, 655
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 653
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 1 cut(s) 538
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 4 cut(s) 20, 156, 217, 526
RsaNI GTAC 4 cut(s) 19, 155, 216, 525
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 2 cut(s) 102, 477
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 3 cut(s) 123, 391, 538
Sau96I GGNCC 1 cut(s) 653
SchI GAGTC 2 cut(s) 83, 281
ScrFI CCNGG 2 cut(s) 73, 657
SduI GDGCHC 1 cut(s) 111
SetI ASST 7 cut(s) 48, 77, 153, 286, 438, 450, 618
SfaNI GCATC 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 520
Sse9I AATT 5 cut(s) 161, 379, 425, 474, 565
SsiI CCGC 2 cut(s) 242, 536
StyD4I CCNGG 2 cut(s) 71, 655
TaaI ACNGT 2 cut(s) 59, 327
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 126, 588
TasI AATT 5 cut(s) 161, 379, 425, 474, 565
TatI WGTACW 2 cut(s) 215, 524
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 2 cut(s) 102, 477
Tru9I TTAA 2 cut(s) 102, 477
TscAI CASTG 1 cut(s) 649
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 219, 501
TspRI CASTG 1 cut(s) 649
XapI RAATTY 3 cut(s) 161, 379, 425
XceI RCATGY 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.