Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

52234359 .. 52236721

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG447400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCGTCGATTTCAAGTGGTTTCCGTGAGTACTTGAAACGTAGTAAGTTTTACTGGCACATTAGTACTCCGTTCTGTGTTTCTGAATTACTTTTGATTCACCCAAACATGAGGGTCTCGCAAGAGTTGCAGATTATTGCTGGACTAGTGGAGCATCGACTTTCTGATGAATTTTCTTCTCAAACAATACTTGTTGCTTCTGTAGAAAATGATCCAGGTGGTGGAAATGAGGTTGAAACATCGGACCTGTACCCTCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009741 GO:0009987 GO:0010033 GO:0014070 GO:0015994 GO:0015995 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0033993 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cofac_haem_bdg RETICULATA-like

Protein Analysis

87

Amino Acids

9.77

Weight (kDa)

4.96

Isoelectric Point (pI)

57.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	32, 67, 251
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	15, 37, 236
AhlI	ACTAGT	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	214
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	145
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	201
BmcAI	AGTACT	2 cut(s)	32, 67
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	246
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	31, 66, 250
CviAII	CATG	1 cut(s)	109
CviQI	GTAC	3 cut(s)	31, 66, 250
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	112
FaiI	YATR	1 cut(s)	110
FatI	CATG	1 cut(s)	108
FspBI	CTAG	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	3 cut(s)	85, 166, 244
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	40, 126, 201, 228, 260
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	40
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	2 cut(s)	86, 170
MnlI	CCTC	3 cut(s)	105, 223, 264
MseI	TTAA	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	3 cut(s)	32, 67, 251
RsaNI	GTAC	3 cut(s)	31, 66, 250
SaqAI	TTAA	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	244
ScaI	AGTACT	2 cut(s)	32, 67
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	4 cut(s)	43, 220, 234, 249
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	244
SpeI	ACTAGT	1 cut(s)	145
Sse9I	AATT	2 cut(s)	86, 170
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	8, 157
TasI	AATT	2 cut(s)	86, 170
TatI	WGTACW	2 cut(s)	30, 65
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	2 cut(s)	14, 60
Van91I	CCANNNNNTGG	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	170
XspI	CTAG	1 cut(s)	146
ZrmI	AGTACT	2 cut(s)	32, 67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.