Rmu_sc0001461.1_g000088

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001461.1
OG0000575
Physical Location & Seq
Reverse (-)
312973 .. 314225
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001461.1_g000088.1.cds

Sequence Viewer

Length: 420 bp
atgtgtgaagagcctcaagttcaagatgcagccaaccatgttgtgaagagccttcaacaaaagtccaattcattgttcccttatgagcttcaagagattgtccatgctaaggcagaggctatggattcatttgagccctatgaaaatggaacaaatggatcaaatggagagaatggcgcaaatgtagaaaacgacgcaaatggagaaaacagggcagatggaaacggggtagagcatgcattgccacccccaccccctgttaacccaccagatgttgttccattgcgtgctcaagtagatatcacacctgaacctttaaagaagaagattgtgcacctaccaattgctaggcgaggccttggaacaaaagggcaaaagattcctctgctgactaatagatttaaatctcttactctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

139

Amino Acids

15.11

Weight (kDa)

5.54

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 3 cut(s) 23, 56, 92
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 2 cut(s) 292, 336
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 1 cut(s) 166
AoxI GGCC 1 cut(s) 355
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 1 cut(s) 29
AspLEI GCGC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 292, 336
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 212
BfaI CTAG 1 cut(s) 348
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmsI GCATC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse3DI GCAATG 2 cut(s) 239, 281
Bse8I GATNNNNATC 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 2 cut(s) 239, 281
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 292, 336
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 357
Bsp1286I GDGCHC 3 cut(s) 138, 292, 336
Bsp143I GATC 1 cut(s) 158
BspANI GGCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 166
BspQI GCTCTTC 2 cut(s) 3, 41
BsrDI GCAATG 2 cut(s) 239, 281
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 3, 41
BstAPI GCANNNNNTGC 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 237, 288
BstDEI CTNAG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 41
BsuRI GGCC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 237, 288
CfoI GCGC 1 cut(s) 179
CseI GACGC 1 cut(s) 203
CviAII CATG 3 cut(s) 38, 104, 236
CviJI RGCY 7 cut(s) 13, 32, 51, 88, 119, 136, 357
CviKI_1 RGCY 7 cut(s) 13, 32, 51, 88, 119, 136, 357
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
DraI TTTAAA 2 cut(s) 318, 403
Eam1104I CTCTTC 2 cut(s) 3, 41
EarI CTCTTC 2 cut(s) 3, 41
Eco130I CCWWGG 1 cut(s) 358
Eco147I AGGCCT 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 301
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 241
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 3 cut(s) 41, 107, 239
FaiI YATR 6 cut(s) 39, 84, 105, 122, 141, 237
FatI CATG 3 cut(s) 37, 103, 235
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 357
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 179
Hin1II CATG 3 cut(s) 41, 107, 239
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 125, 379
HpaI GTTAAC 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 262, 334
Hpy188III TCNNGA 2 cut(s) 23, 92
Hpy8I GTNNAC 2 cut(s) 262, 334
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 29, 239, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 41, 107, 239
HspAI GCGC 1 cut(s) 177
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 158
LguI GCTCTTC 2 cut(s) 3, 41
LpnPI CCDG 4 cut(s) 196, 270, 282, 321
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 348
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 4 cut(s) 20, 58, 334, 337
MfeI CAATTG 1 cut(s) 342
MhlI GDGCHC 3 cut(s) 138, 292, 336
MluCI AATT 2 cut(s) 67, 342
MnlI CCTC 4 cut(s) 24, 109, 347, 393
Mph1103I ATGCAT 1 cut(s) 241
MseI TTAA 3 cut(s) 261, 317, 402
MunI CAATTG 1 cut(s) 342
MwoI GCNNNNNNNGC 1 cut(s) 241
NdeII GATC 1 cut(s) 158
NlaIII CATG 3 cut(s) 41, 107, 239
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 357
PciSI GCTCTTC 2 cut(s) 3, 41
PfeI GAWTC 2 cut(s) 125, 379
PkrI GCNGC 1 cut(s) 31
SapI GCTCTTC 2 cut(s) 3, 41
SaqAI TTAA 3 cut(s) 261, 317, 402
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 158
SduI GDGCHC 3 cut(s) 138, 292, 336
SetI ASST 4 cut(s) 90, 310, 316, 339
SfaNI GCATC 1 cut(s) 16
SmiI ATTTAAAT 1 cut(s) 403
SmlI CTYRAG 2 cut(s) 15, 291
SmoI CTYRAG 2 cut(s) 15, 291
SphI GCATGC 1 cut(s) 239
Sse9I AATT 2 cut(s) 67, 342
SseBI AGGCCT 1 cut(s) 357
SspMI CTAG 1 cut(s) 348
StuI AGGCCT 1 cut(s) 357
StyI CCWWGG 1 cut(s) 358
SwaI ATTTAAAT 1 cut(s) 403
TasI AATT 2 cut(s) 67, 342
TfiI GAWTC 2 cut(s) 125, 379
Tru1I TTAA 3 cut(s) 261, 317, 402
Tru9I TTAA 3 cut(s) 261, 317, 402
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 60, 117, 156
VneI GTGCAC 1 cut(s) 332
XceI RCATGY 1 cut(s) 239
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.