RLG00000013883

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000575
Physical Location & Seq
Reverse (-)
43526063 .. 43527379
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013883

Sequence Viewer

Length: 321 bp
ATGCAGCACCTTGCTGCCTTGCTCGACGATCGTGGTCACCTGGTCGCCTGGTCGGGACTCTGGGAGCTTCAGGCGTTGCCCTGTTTGATTAGGTTTTATGATGAACCTGATATTTATCTTGTGGCAAGTAAACTATTAATTTTTCTATTGGGAGAATTCTTGGCGGAATTCATTAACTGCGGTGGTGATTTTGAAAGCCTGGCCAAGGAGTTGTTGGAAGAGCATGAAAGACTAAAGGATCGCCCATTTCCATATGATGATACGATGGAGACTGGCAAAGCACCAAGTGGTGAACTGGGCACATGTAATCTCAGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.97

Weight (kDa)

4.43

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 164, 180
AclWI GGATC 1 cut(s) 246
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 2 cut(s) 155, 167
AcuI CTGAAG 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 287
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 3 cut(s) 39, 47, 198
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 1 cut(s) 246
AlwNI CAGNNNCTG 1 cut(s) 318
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 4, 14
ApoI RAATTY 2 cut(s) 155, 167
AseI ATTAAT 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 29, 197, 302
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 203
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 3 cut(s) 41, 49, 200
BcoDI GTCTC 1 cut(s) 263
BisI GCNGC 2 cut(s) 5, 15
BlsI GCNGC 2 cut(s) 6, 16
Bme1390I CCNGG 3 cut(s) 41, 49, 200
BmrFI CCNGG 3 cut(s) 41, 49, 200
BmrI ACTGGG 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 277, 300
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 3 cut(s) 41, 49, 200
BseDI CCNNGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 277, 300
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 28, 238
BspACI CCGC 2 cut(s) 164, 180
BspANI GGCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 213
BsrI ACTGG 2 cut(s) 277, 300
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 28, 238
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 3 cut(s) 41, 49, 200
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 311
BstEII GGTNACC 1 cut(s) 35
BstENI CCTNNNNNAGG 1 cut(s) 203
BstKTI GATC 2 cut(s) 31, 241
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 2 cut(s) 28, 238
BstMCI CGRYCG 1 cut(s) 31
BstNI CCWGG 3 cut(s) 41, 49, 200
BstNSI RCATGY 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 3 cut(s) 39, 47, 198
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 318
CsiI ACCWGGT 1 cut(s) 39
CviAII CATG 2 cut(s) 224, 303
CviJI RGCY 3 cut(s) 67, 198, 203
CviKI_1 RGCY 3 cut(s) 67, 198, 203
DdeI CTNAG 1 cut(s) 311
DpnI GATC 2 cut(s) 30, 240
DpnII GATC 2 cut(s) 28, 238
DraIII CACNNNGTG 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoO65I GGTNACC 1 cut(s) 35
EcoRI GAATTC 2 cut(s) 155, 167
EcoRII CCWGG 3 cut(s) 39, 47, 198
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 2 cut(s) 227, 306
FaiI YATR 5 cut(s) 99, 225, 253, 255, 304
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 223, 302
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 5, 15
Fsp4HI GCNGC 2 cut(s) 5, 15
GluI GCNGC 2 cut(s) 5, 15
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 2 cut(s) 227, 306
HinfI GANTC 1 cut(s) 57
HphI GGTGA 3 cut(s) 29, 197, 302
Hpy166II GTNNAC 2 cut(s) 131, 293
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 2 cut(s) 131, 293
Hpy99I CGWCG 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 2 cut(s) 227, 306
Kzo9I GATC 2 cut(s) 28, 238
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 35
MalI GATC 2 cut(s) 30, 240
MboI GATC 2 cut(s) 28, 238
MboII GAAGA 1 cut(s) 230
MhlI GDGCHC 1 cut(s) 302
MlsI TGGCCA 1 cut(s) 203
MluCI AATT 3 cut(s) 138, 155, 167
MluNI TGGCCA 1 cut(s) 203
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 195
Mox20I TGGCCA 1 cut(s) 203
MscI TGGCCA 1 cut(s) 203
MseI TTAA 2 cut(s) 137, 174
Msp20I TGGCCA 1 cut(s) 203
MspR9I CCNGG 3 cut(s) 41, 49, 200
MvaI CCWGG 3 cut(s) 41, 49, 200
NdeI CATATG 1 cut(s) 253
NdeII GATC 2 cut(s) 28, 238
NlaIII CATG 2 cut(s) 227, 306
NmuCI GTSAC 1 cut(s) 35
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 213
PkrI GCNGC 2 cut(s) 6, 16
Ple19I CGATCG 1 cut(s) 31
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
PscI ACATGT 1 cut(s) 302
PshBI ATTAAT 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 39, 47, 198
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 3 cut(s) 39, 47, 198
PstNI CAGNNNCTG 1 cut(s) 318
PvuI CGATCG 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 137, 174
SatI GCNGC 2 cut(s) 5, 15
Sau3AI GATC 2 cut(s) 28, 238
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 3 cut(s) 41, 49, 200
SduI GDGCHC 1 cut(s) 302
SetI ASST 6 cut(s) 12, 42, 69, 95, 109, 320
SexAI ACCWGGT 1 cut(s) 39
Sse9I AATT 3 cut(s) 138, 155, 167
SsiI CCGC 2 cut(s) 164, 180
StyD4I CCNGG 3 cut(s) 39, 47, 198
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 138, 155, 167
Tru1I TTAA 2 cut(s) 137, 174
Tru9I TTAA 2 cut(s) 137, 174
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 2 cut(s) 4, 14
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 117, 160, 240
VspI ATTAAT 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 155, 167
XceI RCATGY 1 cut(s) 306
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.