Rh6CG205600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000575
Physical Location & Seq
Reverse (-)
34276284 .. 34278997
2714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG205600.1

Sequence Viewer

Length: 588 bp
ATGAGCTGCATTGATGATGCTGCTTGGGAAAAAGAGGTGGTACCAGCTTTTGCTGAACTTGGCTTTATATGCACATGGACCAGCGATAATAAGATGGGATTTTCGATCGATCCAAAACTAGGGCCGCTTGAGGACCCGAGTGTCTACTTCAGGGCTGTGTATGCTTTAAATGCTTTTGCATGTGGTTTTCCTGCACATTGGGCACTGAAACCACTGTCGGGCGATATGGAGTTCGATTCCTTCAAGCTGACACCCGCGGCTGGGAGTACTCAGGCACAATTGGTTGAACGGTACAACATTTTTAAAGGCCTATATCAACATCATCCTGAGCTTCAGGCGTTGCCCTGTGCAATTAGGTTTTATGATGAACCTGATATTTCTCTTGTGGCAAGTAAACTATTAATTTATCTACTGGTAGATTTCTCGGTGGAATTCATTAAGTGCGGTGGTGATTTTGAAAGCCTGGCCAAGAAGTTGTTGGAAGATCATGAAACACTAAAGGATCACCCATTTCCATACATGGATGATACGATGGAGACTGGCAAAGCACTAAGTGATGAACTGGGCAGATGTAATCTGCTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.86

Weight (kDa)

4.61

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc65I GGTACC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 40
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 257
AciI CCGC 4 cut(s) 125, 255, 257, 444
AclWI GGATC 2 cut(s) 104, 510
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 2 cut(s) 133, 317
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 3 cut(s) 42, 268, 293
AfiI CCNNNNNNNGG 4 cut(s) 119, 218, 260, 261
AgsI TTSAA 3 cut(s) 244, 287, 458
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 4 cut(s) 6, 47, 247, 331
AluI AGCT 4 cut(s) 6, 47, 247, 331
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 2 cut(s) 104, 510
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 3 cut(s) 122, 307, 465
ApeKI GCWGC 2 cut(s) 6, 20
ApoI RAATTY 1 cut(s) 431
AseI ATTAAT 1 cut(s) 401
Asp718I GGTACC 1 cut(s) 40
AspS9I GGNCC 3 cut(s) 78, 122, 133
AsuHPI GGTGA 2 cut(s) 461, 497
AvaI CYCGRG 1 cut(s) 136
AvaII GGWCC 2 cut(s) 78, 133
BaeGI GKGCMC 1 cut(s) 205
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 88, 526
BciT130I CCWGG 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 119
BisI GCNGC 4 cut(s) 7, 21, 125, 258
BlsI GCNGC 4 cut(s) 8, 22, 126, 259
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 464
Bme18I GGWCC 2 cut(s) 78, 133
BmeT110I CYCGRG 1 cut(s) 136
BmgT120I GGNCC 3 cut(s) 78, 122, 133
BmiI GGNNCC 2 cut(s) 42, 135
BmrFI CCNGG 1 cut(s) 464
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 1 cut(s) 7
BmuI ACTGGG 1 cut(s) 572
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 149
Bsa29I ATCGAT 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 218, 260, 261
Bse1I ACTGG 3 cut(s) 417, 544, 567
BseBI CCWGG 1 cut(s) 464
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 2 cut(s) 322, 529
BseLI CCNNNNNNNGG 4 cut(s) 119, 218, 260, 261
BseMII CTCAG 2 cut(s) 284, 318
BseNI ACTGG 3 cut(s) 417, 544, 567
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 3 cut(s) 124, 309, 467
BshNI GGYRCC 1 cut(s) 40
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 136
BslI CCNNNNNNNGG 4 cut(s) 119, 218, 260, 261
BsmAI GTCTC 1 cut(s) 530
BsnI GGCC 3 cut(s) 124, 309, 467
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 4 cut(s) 105, 109, 484, 502
BspACI CCGC 4 cut(s) 125, 255, 257, 444
BspANI GGCC 3 cut(s) 124, 309, 467
BspCNI CTCAG 2 cut(s) 283, 319
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 1 cut(s) 257
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 42, 135
BspPI GGATC 2 cut(s) 104, 510
BspT107I GGYRCC 1 cut(s) 40
BsrI ACTGG 3 cut(s) 417, 544, 567
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 4 cut(s) 105, 109, 484, 502
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 2 cut(s) 216, 291
BstDEI CTNAG 3 cut(s) 270, 327, 551
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 322, 529
BstFNI CGCG 1 cut(s) 257
BstKTI GATC 4 cut(s) 108, 112, 487, 505
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 4 cut(s) 105, 109, 484, 502
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 69, 161, 170, 200
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 124, 309, 467
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 322, 529
BtsIMutI CAGTG 2 cut(s) 203, 212
CciI TCATGA 1 cut(s) 487
Cfr13I GGNCC 3 cut(s) 78, 122, 133
Cfr42I CCGCGG 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 108
Csp6I GTAC 3 cut(s) 41, 267, 292
CviAII CATG 4 cut(s) 75, 180, 488, 520
CviQI GTAC 3 cut(s) 41, 267, 292
DdeI CTNAG 3 cut(s) 270, 327, 551
DpnI GATC 4 cut(s) 107, 111, 486, 504
DpnII GATC 4 cut(s) 105, 109, 484, 502
DraI TTTAAA 2 cut(s) 168, 304
DraIII CACNNNGTG 1 cut(s) 554
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 78, 133
Eco57I CTGAAG 2 cut(s) 133, 317
Eco88I CYCGRG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 462
FaeI CATG 4 cut(s) 78, 183, 491, 523
FatI CATG 4 cut(s) 74, 179, 487, 519
FauI CCCGC 1 cut(s) 262
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 7, 21, 125, 258
FokI GGATG 2 cut(s) 309, 536
Fsp4HI GCNGC 4 cut(s) 7, 21, 125, 258
FspBI CTAG 1 cut(s) 119
GluI GCNGC 4 cut(s) 7, 21, 125, 258
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 3 cut(s) 124, 309, 467
Hin1II CATG 4 cut(s) 78, 183, 491, 523
HinfI GANTC 1 cut(s) 236
HphI GGTGA 2 cut(s) 461, 497
Hpy166II GTNNAC 2 cut(s) 145, 395
Hpy188III TCNNGA 2 cut(s) 326, 488
Hpy8I GTNNAC 2 cut(s) 145, 395
HpyAV CCTTC 1 cut(s) 250
HpyCH4III ACNGT 2 cut(s) 216, 291
HpyCH4V TGCA 5 cut(s) 9, 72, 179, 194, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 69, 161, 170, 200
HpyF3I CTNAG 3 cut(s) 270, 327, 551
Hsp92II CATG 4 cut(s) 78, 183, 491, 523
KpnI GGTACC 1 cut(s) 44
KspI CCGCGG 1 cut(s) 258
Kzo9I GATC 4 cut(s) 105, 109, 484, 502
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 7
MaeI CTAG 1 cut(s) 119
MalI GATC 4 cut(s) 107, 111, 486, 504
MboI GATC 4 cut(s) 105, 109, 484, 502
MboII GAAGA 1 cut(s) 494
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 205
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 4 cut(s) 278, 351, 402, 431
MluNI TGGCCA 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 2 cut(s) 28, 124
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 4 cut(s) 167, 303, 401, 438
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 464
MunI CAATTG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 464
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 4 cut(s) 69, 161, 170, 200
NdeII GATC 4 cut(s) 105, 109, 484, 502
NlaIII CATG 4 cut(s) 78, 183, 491, 523
NlaIV GGNNCC 2 cut(s) 42, 135
NspI RCATGY 1 cut(s) 183
PagI TCATGA 1 cut(s) 487
PceI AGGCCT 1 cut(s) 309
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 8, 22, 126, 259
Ple19I CGATCG 1 cut(s) 108
PpuMI RGGWCCY 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 42, 135
PspPI GGNCC 3 cut(s) 78, 122, 133
PspPPI RGGWCCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 108
RsaI GTAC 3 cut(s) 42, 268, 293
RsaNI GTAC 3 cut(s) 41, 267, 292
SacII CCGCGG 1 cut(s) 258
SaqAI TTAA 4 cut(s) 167, 303, 401, 438
SatI GCNGC 4 cut(s) 7, 21, 125, 258
Sau3AI GATC 4 cut(s) 105, 109, 484, 502
Sau96I GGNCC 3 cut(s) 78, 122, 133
ScaI AGTACT 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 464
SduI GDGCHC 1 cut(s) 205
SetI ASST 8 cut(s) 8, 39, 49, 249, 333, 359, 373, 587
SfaNI GCATC 1 cut(s) 7
Sfr303I CCGCGG 1 cut(s) 258
SgrBI CCGCGG 1 cut(s) 258
SinI GGWCC 2 cut(s) 78, 133
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 4 cut(s) 278, 351, 402, 431
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 4 cut(s) 125, 255, 257, 444
SspMI CTAG 1 cut(s) 119
StuI AGGCCT 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 216, 291
TaqI TCGA 3 cut(s) 104, 108, 234
TasI AATT 4 cut(s) 278, 351, 402, 431
TatI WGTACW 1 cut(s) 266
TauI GCSGC 2 cut(s) 127, 260
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 4 cut(s) 167, 303, 401, 438
Tru9I TTAA 4 cut(s) 167, 303, 401, 438
TscAI CASTG 2 cut(s) 210, 219
TseI GCWGC 2 cut(s) 6, 20
TspDTI ATGAA 4 cut(s) 381, 424, 504, 573
TspRI CASTG 2 cut(s) 210, 219
VpaK11BI GGWCC 2 cut(s) 78, 133
VspI ATTAAT 1 cut(s) 401
XapI RAATTY 1 cut(s) 431
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.