Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000442.1

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

87363 .. 91320

Gene Structure 3958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000442.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtcgccgtcgtcatctctccccaaacctccgacctcgccgtctcccctagacacctctgtgatgccattgaagagttccagtgccaccagcgcaccgacgagttatgcgtcctcacttacccataggtcttacacatctcatatcatccaccactccaaaaaggtccgctcttcaattgaatttggtgggcatgctccaggatggcaagatgtgcagcctcatgatcctcaagttcaagaagcagccaaccatgttgtgaaaagccttcaacaaaagtccaattcattgttcccttatgagcttcaagagattgtccatgctaaggcagaggctatggattcatttgagccctatggaaatggaacaaatggatcaaatggagagaatggcgcaaatgtagaaaatgacgcaaatggagaaaacagggcagacggaaacggggcagagcatgcattgccacccccaccccctgttatcccaccagatgcgaggccttggaacaaaagggcaaaagattcctctgctgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

177

Amino Acids

18.85

Weight (kDa)

5.95

Isoelectric Point (pI)

62.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	171
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	2 cut(s)	221, 382
AcsI	RAATTY	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	6 cut(s)	73, 177, 182, 239, 272, 308
AjnI	CCWGG	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	275, 307
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	221, 382
AoxI	GGCC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	217, 245
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	95, 395
AspS9I	GGNCC	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	229, 257
BccI	CCATC	1 cut(s)	198
BceAI	ACGGC	1 cut(s)	25
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	2 cut(s)	218, 246
BlsI	GCNGC	2 cut(s)	219, 247
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	54, 478
BpmI	CTGGAG	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	497
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	497
BseGI	GGATG	2 cut(s)	147, 209
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	229, 257
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	226, 374
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	496
BspHI	TCATGA	1 cut(s)	223
BspPI	GGATC	2 cut(s)	221, 382
BspQI	GCTCTTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	497
BssMI	GATC	2 cut(s)	226, 374
BssT1I	CCWWGG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	68, 178
BstAPI	GCANNNNNTGC	3 cut(s)	214, 452, 457
BstC8I	GCNNGC	2 cut(s)	195, 453
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	147, 209
BstHHI	GCGC	2 cut(s)	95, 395
BstKTI	GATC	2 cut(s)	229, 377
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	2 cut(s)	226, 374
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 214, 452, 457
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	2 cut(s)	197, 455
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	229, 257
BsuRI	GGCC	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	147, 209
BtsIMutI	CAGTG	1 cut(s)	88
Cac8I	GCNNGC	2 cut(s)	195, 453
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	2 cut(s)	95, 395
Cfr13I	GGNCC	1 cut(s)	166
CseI	GACGC	2 cut(s)	99, 419
CviAII	CATG	5 cut(s)	194, 224, 254, 320, 452
CviJI	RGCY	7 cut(s)	220, 248, 267, 304, 335, 352, 496
CviKI_1	RGCY	7 cut(s)	220, 248, 267, 304, 335, 352, 496
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	228, 376
DpnII	GATC	2 cut(s)	226, 374
DrdI	GACNNNNNNGTC	1 cut(s)	40
DseDI	GACNNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	68, 178
EarI	CTCTTC	2 cut(s)	68, 178
Eco130I	CCWWGG	1 cut(s)	497
Eco147I	AGGCCT	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	497
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	497
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	5 cut(s)	197, 227, 257, 323, 455
FatI	CATG	5 cut(s)	193, 223, 253, 319, 451
Fnu4HI	GCNGC	2 cut(s)	218, 246
FokI	GGATG	2 cut(s)	134, 216
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	218, 246
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	94, 394
GluI	GCNGC	2 cut(s)	218, 246
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	496
HgaI	GACGC	2 cut(s)	99, 419
HhaI	GCGC	2 cut(s)	95, 395
Hin1II	CATG	5 cut(s)	197, 227, 257, 323, 455
Hin6I	GCGC	2 cut(s)	93, 393
HinP1I	GCGC	2 cut(s)	93, 393
HinfI	GANTC	2 cut(s)	341, 518
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	3 cut(s)	224, 239, 308
Hpy99I	CGWCG	2 cut(s)	13, 103
HpyAV	CCTTC	1 cut(s)	278
HpyCH4V	TGCA	2 cut(s)	217, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 214, 452, 457
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	197, 227, 257, 323, 455
HspAI	GCGC	2 cut(s)	93, 393
Kzo9I	GATC	2 cut(s)	226, 374
LguI	GCTCTTC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	7 cut(s)	94, 103, 186, 213, 412, 486, 498
Lsp1109I	GCAGC	2 cut(s)	229, 257
LweI	GCATC	2 cut(s)	54, 478
MaeI	CTAG	1 cut(s)	50
MalI	GATC	2 cut(s)	228, 376
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	2 cut(s)	226, 374
MboII	GAAGA	2 cut(s)	85, 165
MfeI	CAATTG	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	177, 182, 283
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	9 cut(s)	39, 46, 67, 124, 231, 240, 325, 486, 532
Mph1103I	ATGCAT	1 cut(s)	457
MslI	CAYNNNNRTG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	4 cut(s)	92, 214, 452, 457
NdeII	GATC	2 cut(s)	226, 374
NlaIII	CATG	5 cut(s)	197, 227, 257, 323, 455
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	2 cut(s)	197, 455
OliI	CACNNNNGTG	1 cut(s)	59
PaeI	GCATGC	2 cut(s)	197, 455
PagI	TCATGA	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	496
PciSI	GCTCTTC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	341, 518
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	219, 247
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	178
SatI	GCNGC	2 cut(s)	218, 246
Sau3AI	GATC	2 cut(s)	226, 374
Sau96I	GGNCC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	6 cut(s)	31, 38, 59, 131, 168, 306
SfaNI	GCATC	2 cut(s)	54, 478
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SphI	GCATGC	2 cut(s)	197, 455
Sse9I	AATT	3 cut(s)	177, 182, 283
SseBI	AGGCCT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	169
SspMI	CTAG	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	496
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	497
TasI	AATT	3 cut(s)	177, 182, 283
TfiI	GAWTC	2 cut(s)	341, 518
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	2 cut(s)	217, 245
TspDTI	ATGAA	2 cut(s)	276, 333
TspGWI	ACGGA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	166
XapI	RAATTY	1 cut(s)	182
XceI	RCATGY	2 cut(s)	197, 455
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.