Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

42538898 .. 42543192

Gene Structure 4295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCAGGACGATGAGCATGACATGGATATTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTAGTGCTGATTTTTCTGATTGATCAGAAAAAATACAGTGAGGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTATTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAAACGGGGTAGAGCATGCATTGCCACCCCCACCCCATGTTATCCCTCCAGATGTTGTTCCATTGCATGTTCCGACAGATATTACACCTGAACCTTTTGTGCGCCTACCAATTGCGAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCATACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

5.13

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_PSMD3_N	PF25573	11 - 49	1e-06	PSMD3-like, N-terminal TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	170, 322
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	3 cut(s)	188, 221, 257
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	2 cut(s)	82, 253
AluI	AGCT	2 cut(s)	82, 253
AlwI	GGATC	2 cut(s)	170, 322
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	2 cut(s)	166, 194
AspLEI	GCGC	2 cut(s)	335, 462
BanII	GRGCYC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	178, 206
BccI	CCATC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	2 cut(s)	83, 104
BisI	GCNGC	2 cut(s)	167, 195
BlsI	GCNGC	2 cut(s)	168, 196
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	132, 390
Bpu10I	CCTNAGC	2 cut(s)	78, 273
BpuEI	CTTGAG	2 cut(s)	36, 165
BsaBI	GATNNNNATC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse3DI	GCAATG	2 cut(s)	377, 419
Bse8I	GATNNNNATC	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	529
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	2 cut(s)	377, 419
BseMII	CTCAG	1 cut(s)	69
BseXI	GCAGC	2 cut(s)	178, 206
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	274
BsnI	GGCC	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	124, 175, 314
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	170, 322
BspQI	GCTCTTC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	377, 419
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	124, 175, 314
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	3 cut(s)	44, 163, 379
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	78, 273
BstF5I	GGATG	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	335, 462
BstKTI	GATC	3 cut(s)	127, 178, 317
BstMBI	GATC	3 cut(s)	124, 175, 314
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 163, 379
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	3 cut(s)	71, 377, 428
BstSCI	CCNGG	1 cut(s)	148
BstV1I	GCAGC	2 cut(s)	178, 206
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	375
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	2 cut(s)	335, 462
CseI	GACGC	1 cut(s)	359
CviAII	CATG	9 cut(s)	17, 22, 68, 173, 203, 269, 374, 395, 425
CviJI	RGCY	9 cut(s)	82, 146, 169, 197, 216, 253, 284, 301, 483
CviKI_1	RGCY	9 cut(s)	82, 146, 169, 197, 216, 253, 284, 301, 483
DdeI	CTNAG	2 cut(s)	78, 273
DpnI	GATC	3 cut(s)	126, 177, 316
DpnII	GATC	3 cut(s)	124, 175, 314
DraI	TTTAAA	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	484
Eco147I	AGGCCT	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	9 cut(s)	20, 25, 71, 176, 206, 272, 377, 398, 428
FatI	CATG	9 cut(s)	16, 21, 67, 172, 202, 268, 373, 394, 424
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	167, 195
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	2 cut(s)	167, 195
FspBI	CTAG	2 cut(s)	83, 104
GlaI	GCGC	2 cut(s)	334, 461
GluI	GCNGC	2 cut(s)	167, 195
GsuI	CTGGAG	2 cut(s)	132, 390
HaeIII	GGCC	1 cut(s)	483
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	335, 462
Hin1II	CATG	9 cut(s)	20, 25, 71, 176, 206, 272, 377, 398, 428
Hin6I	GCGC	2 cut(s)	333, 460
HinP1I	GCGC	2 cut(s)	333, 460
HinfI	GANTC	2 cut(s)	290, 505
Hpy188I	TCNGA	3 cut(s)	120, 129, 432
Hpy188III	TCNNGA	4 cut(s)	173, 188, 257, 407
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	6 cut(s)	4, 38, 166, 194, 377, 424
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 163, 379
HpyF3I	CTNAG	2 cut(s)	78, 273
Hsp92II	CATG	9 cut(s)	20, 25, 71, 176, 206, 272, 377, 398, 428
HspAI	GCGC	2 cut(s)	333, 460
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	124, 175, 314
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	90, 135, 162, 420, 459
Lsp1109I	GCAGC	2 cut(s)	178, 206
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	83, 104
MalI	GATC	3 cut(s)	126, 177, 316
MboI	GATC	3 cut(s)	124, 175, 314
MboII	GAAGA	1 cut(s)	223
MfeI	CAATTG	1 cut(s)	468
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	232, 468
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	9 cut(s)	82, 136, 180, 189, 274, 414, 468, 473, 519
Mph1103I	ATGCAT	1 cut(s)	379
MseI	TTAA	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	44, 163, 379
NdeII	GATC	3 cut(s)	124, 175, 314
NlaIII	CATG	9 cut(s)	20, 25, 71, 176, 206, 272, 377, 398, 428
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	3 cut(s)	71, 377, 428
PaeI	GCATGC	1 cut(s)	377
PagI	TCATGA	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	290, 505
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	168, 196
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	147
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	2 cut(s)	167, 195
Sau3AI	GATC	3 cut(s)	124, 175, 314
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	4 cut(s)	84, 255, 448, 454
SfaNI	GCATC	1 cut(s)	181
SmiI	ATTTAAAT	1 cut(s)	529
SmlI	CTYRAG	2 cut(s)	51, 180
SmoI	CTYRAG	2 cut(s)	51, 180
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	2 cut(s)	232, 468
SseBI	AGGCCT	1 cut(s)	483
SspMI	CTAG	2 cut(s)	83, 104
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	484
SwaI	ATTTAAAT	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	140
TasI	AATT	2 cut(s)	232, 468
TfiI	GAWTC	2 cut(s)	290, 505
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	166, 194
TspDTI	ATGAA	2 cut(s)	225, 282
TspRI	CASTG	1 cut(s)	145
XceI	RCATGY	3 cut(s)	71, 377, 428
XspI	CTAG	2 cut(s)	83, 104
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.