RchiOBHm_Chr1g0317651

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000575
Physical Location & Seq
Forward (+)
5191994 .. 5197169
5176 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54794

Sequence Viewer

Length: 276 bp
ATGGATTCATTTGAGCCCTATGGAAATGAAACAAATGGAGAGAATGGCGCAAATGTAGAAAATGTCGCAAATGGAGAAAAGAGGGCAGAGCATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGGAGAAGATTGTGCGCCTACCAATTGCTAGGCTAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATGTCTTACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

91

Amino Acids

9.9

Weight (kDa)

6.57

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Alw21I GWGCWC 1 cut(s) 148
AoxI GGCC 1 cut(s) 211
AspLEI GCGC 2 cut(s) 50, 192
BanII GRGCYC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 148
BfaI CTAG 2 cut(s) 204, 209
BpuEI CTTGAG 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 214
Bse3DI GCAATG 2 cut(s) 95, 137
BseDI CCNNGG 1 cut(s) 214
BseMI GCAATG 2 cut(s) 95, 137
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 148
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 18, 148
BspANI GGCC 1 cut(s) 213
BsrDI GCAATG 2 cut(s) 95, 137
BssECI CCNNGG 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 214
BstAPI GCANNNNNTGC 2 cut(s) 92, 97
BstC8I GCNNGC 2 cut(s) 93, 144
BstHHI GCGC 2 cut(s) 50, 192
BstMWI GCNNNNNNNGC 2 cut(s) 92, 97
BstNSI RCATGY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 93, 144
CfoI GCGC 2 cut(s) 50, 192
CviAII CATG 1 cut(s) 92
CviJI RGCY 3 cut(s) 16, 208, 213
CviKI_1 RGCY 3 cut(s) 16, 208, 213
DraI TTTAAA 2 cut(s) 174, 259
Eco130I CCWWGG 1 cut(s) 214
Eco147I AGGCCT 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 1 cut(s) 95
FaiI YATR 2 cut(s) 21, 93
FatI CATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 18
FspBI CTAG 2 cut(s) 204, 209
GlaI GCGC 2 cut(s) 49, 191
HaeIII GGCC 1 cut(s) 213
HhaI GCGC 2 cut(s) 50, 192
Hin1II CATG 1 cut(s) 95
Hin6I GCGC 2 cut(s) 48, 190
HinP1I GCGC 2 cut(s) 48, 190
HinfI GANTC 2 cut(s) 5, 235
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 97
Hsp92II CATG 1 cut(s) 95
HspAI GCGC 2 cut(s) 48, 190
LpnPI CCDG 3 cut(s) 126, 138, 177
MaeI CTAG 2 cut(s) 204, 209
MboII GAAGA 1 cut(s) 193
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 18, 148
MluCI AATT 1 cut(s) 198
MnlI CCTC 2 cut(s) 75, 249
Mph1103I ATGCAT 1 cut(s) 97
MseI TTAA 2 cut(s) 173, 258
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 92, 97
NlaIII CATG 1 cut(s) 95
NsiI ATGCAT 1 cut(s) 97
NspI RCATGY 1 cut(s) 95
PaeI GCATGC 1 cut(s) 95
PceI AGGCCT 1 cut(s) 213
PfeI GAWTC 2 cut(s) 5, 235
SaqAI TTAA 2 cut(s) 173, 258
SduI GDGCHC 2 cut(s) 18, 148
SetI ASST 2 cut(s) 166, 172
SgeI CNNG 9 cut(s) 104, 125, 137, 155, 161, 176, 216, 221, 227
SmiI ATTTAAAT 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SphI GCATGC 1 cut(s) 95
Sse9I AATT 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 213
SspMI CTAG 2 cut(s) 204, 209
StuI AGGCCT 1 cut(s) 213
StyI CCWWGG 1 cut(s) 214
SwaI ATTTAAAT 1 cut(s) 259
TasI AATT 1 cut(s) 198
TfiI GAWTC 2 cut(s) 5, 235
Tru1I TTAA 2 cut(s) 173, 258
Tru9I TTAA 2 cut(s) 173, 258
TspDTI ATGAA 1 cut(s) 42
XceI RCATGY 1 cut(s) 95
XspI CTAG 2 cut(s) 204, 209
Zsp2I ATGCAT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.