Rorug06G0070300

exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000575
Physical Location & Seq
Forward (+)
9371753 .. 9372177
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0070300.1

Sequence Viewer

Length: 243 bp
ATGAGCAGGTCAGGTCAGCCCCCGGATATGAAGAAGTACATGGACAAGAAGCTTCAAATCAAGCTAAATGCAAACCGAATGATTGTTGGAACCTTGCGTGGATTTGACCAGTTCATGAATCTGGTGGTTGATAACACTGTAGAAGTGAATGGTGATGAAAAGACTGACATAGGCATGGTGGTGATCAGAGGAAACAGTGTGGTTACTGTTGAAGCACTTGAACCTGTGGCCAAAATGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

80

Amino Acids

8.94

Weight (kDa)

8.03

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 71 8.2e-23 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 228
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 3 cut(s) 56, 212, 221
AluBI AGCT 2 cut(s) 52, 64
AluI AGCT 2 cut(s) 52, 64
AoxI GGCC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 164, 193
BalI TGGCCA 1 cut(s) 230
BclI TGATCA 1 cut(s) 183
BcnI CCSGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 21
BseNI ACTGG 1 cut(s) 109
BshFI GGCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 23
BsnI GGCC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 183
BspANI GGCC 1 cut(s) 230
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 183
Bst4CI ACNGT 3 cut(s) 139, 197, 208
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 230
BtsIMutI CAGTG 2 cut(s) 135, 202
CciI TCATGA 1 cut(s) 114
Csp6I GTAC 1 cut(s) 37
CviAII CATG 3 cut(s) 40, 115, 175
CviJI RGCY 4 cut(s) 19, 52, 64, 230
CviKI_1 RGCY 4 cut(s) 19, 52, 64, 230
CviQI GTAC 1 cut(s) 37
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 228
FaeI CATG 3 cut(s) 43, 118, 178
FaiI YATR 5 cut(s) 29, 41, 116, 170, 176
FatI CATG 3 cut(s) 39, 114, 174
FbaI TGATCA 1 cut(s) 183
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 23
Hin1II CATG 3 cut(s) 43, 118, 178
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 23
HphI GGTGA 2 cut(s) 164, 193
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 115
HpyCH4III ACNGT 3 cut(s) 139, 197, 208
HpyCH4V TGCA 2 cut(s) 71, 238
Hsp92II CATG 3 cut(s) 43, 118, 178
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 4 cut(s) 36, 107, 122, 237
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 230
MluNI TGGCCA 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 1 cut(s) 182
Mox20I TGGCCA 1 cut(s) 230
MscI TGGCCA 1 cut(s) 230
MslI CAYNNNNRTG 2 cut(s) 173, 179
Msp20I TGGCCA 1 cut(s) 230
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 183
NlaIII CATG 3 cut(s) 43, 118, 178
NlaIV GGNNCC 1 cut(s) 91
PagI TCATGA 1 cut(s) 114
PfeI GAWTC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 2 cut(s) 173, 179
Sau3AI GATC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 23
SetI ASST 6 cut(s) 11, 16, 54, 66, 95, 226
SfcI CTRYAG 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 173, 179
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 3 cut(s) 139, 197, 208
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 2 cut(s) 142, 202
TspDTI ATGAA 4 cut(s) 44, 103, 131, 171
TspRI CASTG 2 cut(s) 142, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.