Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

43809164 .. 43834839

Gene Structure 25676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGAGTTCCTTAAATCCTATTCTTGGTAACTGGCAGAGTTGTGAGGCTTTCAAAAAAGCTATGGATAAAGTTAAGGACGATGAGCATGACATGGATATTGATACTGCAACTTCTGCTACTCAAGTTCCCAAGAAACATGCCTCGCCTGAGCTAGAGATTTACTGCTACTTGCTGGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTATTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGTATTACCGATATTGGCTTATCGTCTCTAGGTTGAAGTATCTACAAGCATTTGATATGAGTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

126

Amino Acids

14.5

Weight (kDa)

5.66

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	26, 307
AgsI	TTSAA	5 cut(s)	55, 221, 254, 290, 349
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	3 cut(s)	62, 154, 286
AluI	AGCT	3 cut(s)	62, 154, 286
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	199, 227
BbvI	GCAGC	2 cut(s)	211, 239
BccI	CCATC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	2 cut(s)	155, 342
BisI	GCNGC	2 cut(s)	200, 228
BlsI	GCNGC	2 cut(s)	201, 229
Bme1390I	CCNGG	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	2 cut(s)	150, 306
BpuEI	CTTGAG	2 cut(s)	108, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 307
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	2 cut(s)	26, 307
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	211, 239
BsgI	GTGCAG	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	26, 307
BsmAI	GTCTC	1 cut(s)	343
BsmBI	CGTCTC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	38
BssMI	GATC	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	183
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	2 cut(s)	116, 196
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	150, 306
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 196
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	211, 239
BtsCI	GGATG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	205
CviAII	CATG	6 cut(s)	89, 94, 140, 206, 236, 302
DdeI	CTNAG	2 cut(s)	150, 306
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	6 cut(s)	92, 97, 143, 209, 239, 305
FaiI	YATR	9 cut(s)	65, 90, 95, 141, 207, 237, 282, 303, 371
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	6 cut(s)	88, 93, 139, 205, 235, 301
Fnu4HI	GCNGC	2 cut(s)	200, 228
FokI	GGATG	1 cut(s)	198
Fsp4HI	GCNGC	2 cut(s)	200, 228
FspBI	CTAG	2 cut(s)	155, 342
GluI	GCNGC	2 cut(s)	200, 228
GsuI	CTGGAG	1 cut(s)	165
Hin1II	CATG	6 cut(s)	92, 97, 143, 209, 239, 305
Hpy188III	TCNNGA	3 cut(s)	206, 221, 290
HpyAV	CCTTC	1 cut(s)	260
HpyCH4V	TGCA	3 cut(s)	110, 199, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 196
HpyF3I	CTNAG	2 cut(s)	150, 306
Hsp92II	CATG	6 cut(s)	92, 97, 143, 209, 239, 305
Kzo9I	GATC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	5 cut(s)	19, 161, 162, 168, 195
Lsp1109I	GCAGC	2 cut(s)	211, 239
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	155, 342
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	16, 256
MluCI	AATT	1 cut(s)	265
MnlI	CCTC	4 cut(s)	40, 154, 213, 222
MseI	TTAA	2 cut(s)	14, 75
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	116, 196
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	6 cut(s)	92, 97, 143, 209, 239, 305
NlaIV	GGNNCC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	143
PagI	TCATGA	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	239
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	201, 229
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	14, 75
SatI	GCNGC	2 cut(s)	200, 228
Sau3AI	GATC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	4 cut(s)	64, 156, 288, 347
SfaNI	GCATC	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	123, 213
SmoI	CTYRAG	2 cut(s)	123, 213
Sse9I	AATT	1 cut(s)	265
SspMI	CTAG	2 cut(s)	155, 342
StyD4I	CCNGG	1 cut(s)	181
TasI	AATT	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	14, 75
Tru9I	TTAA	2 cut(s)	14, 75
TseI	GCWGC	2 cut(s)	199, 227
TspDTI	ATGAA	2 cut(s)	17, 258
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	2 cut(s)	155, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.