Rw6G015960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000575
Physical Location & Seq
Forward (+)
30998151 .. 31000888
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G015960.1

Sequence Viewer

Length: 588 bp
ATGGACGAGACAATGATGTACGAGAACGTGTGGGTGGACGAGGTGTCAGCGTCCGACTCATTTTCTTTTAATGTGCCCAATCCAGAAAAGATCGACAGGGATGCTTGGAGTACACAGCTGGTTCCGGAATTTGCTAAGCTTGGCTTAGTATGCACATGGTGGAATGAGCATGAAATGGGATGCACAATTGATCCAACGACAATAGACATTCCACGCTCGGATGTCTTTTTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGTCAAAGTTGGCATTGAAAGTACTGTCGGACGATGACTGGTTAATCACTAGAGACTTTGAAGACGAGATTACTCAGGAACATTCTATCGCTTTTGTGGCAAATGCACGAATATTTGAAATTATGGCGGTTCTCGTGTGGCACGTAATTGTGGACGGTCGTTTGGATGTTGAACAAGAGCTCAATAGTTTGTTGGAGTTTTATGAGAGGCCTTCCGGATTTGAACATAATCCATGCACTGATTCGGGGCCTGGATATGATGATATGATGGAACCTAGCAAATCACTGAATGATCAAATAGGCGAACTACAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.31

Weight (kDa)

4.1

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 124, 485
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 159
AfaI GTAC 3 cut(s) 20, 112, 294
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 5 cut(s) 289, 332, 389, 443, 494
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 3 cut(s) 118, 139, 451
AluI AGCT 3 cut(s) 118, 139, 451
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 2 cut(s) 2, 318
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 2 cut(s) 124, 485
AoxI GGCC 2 cut(s) 479, 518
ApoI RAATTY 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 518
BaeGI GKGCMC 1 cut(s) 78
BanII GRGCYC 2 cut(s) 238, 453
BauI CACGAG 1 cut(s) 404
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 453
BccI CCATC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 522
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 2, 318
BfaI CTAG 2 cut(s) 321, 546
BfmI CTRYAG 1 cut(s) 578
BlpI GCTNAGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 522
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 3 cut(s) 123, 519, 543
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 91, 170, 232
BpiI GAAGAC 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 415
BsaWI WCCGGW 2 cut(s) 124, 485
Bse1I ACTGG 1 cut(s) 314
BseAI TCCGGA 2 cut(s) 124, 485
BseBI CCWGG 1 cut(s) 522
BseGI GGATG 5 cut(s) 106, 185, 226, 247, 442
BseMII CTCAG 2 cut(s) 251, 359
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 430
BshFI GGCC 2 cut(s) 481, 520
BsiEI CGRYCG 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 2 cut(s) 125, 486
BsmAI GTCTC 2 cut(s) 2, 318
BsnI GGCC 2 cut(s) 481, 520
Bsp1286I GDGCHC 3 cut(s) 78, 238, 453
Bsp13I TCCGGA 2 cut(s) 124, 485
Bsp143I GATC 3 cut(s) 90, 190, 562
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 1 cut(s) 398
BspANI GGCC 2 cut(s) 481, 520
BspCNI CTCAG 2 cut(s) 250, 358
BspEI TCCGGA 2 cut(s) 124, 485
BspLI GGNNCC 3 cut(s) 123, 519, 543
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 314
BssMI GATC 3 cut(s) 90, 190, 562
BssSI CACGAG 1 cut(s) 404
Bst2BI CACGAG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 2 cut(s) 297, 428
BstBAI YACGTR 1 cut(s) 415
BstDEI CTNAG 4 cut(s) 135, 145, 237, 345
BstF5I GGATG 5 cut(s) 106, 185, 226, 247, 442
BstKTI GATC 3 cut(s) 93, 193, 565
BstMAI GTCTC 2 cut(s) 2, 318
BstMBI GATC 3 cut(s) 90, 190, 562
BstMCI CGRYCG 1 cut(s) 430
BstMWI GCNNNNNNNGC 4 cut(s) 150, 242, 251, 368
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 1 cut(s) 578
BstSLI GKGCMC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 339
BsuRI GGCC 2 cut(s) 481, 520
BtsCI GGATG 5 cut(s) 106, 185, 226, 247, 442
BtsIMutI CAGTG 2 cut(s) 507, 554
Cfr13I GGNCC 1 cut(s) 518
CseI GACGC 1 cut(s) 39
Csp6I GTAC 3 cut(s) 19, 111, 293
CviAII CATG 3 cut(s) 156, 170, 504
CviJI RGCY 7 cut(s) 118, 139, 144, 236, 451, 481, 520
CviKI_1 RGCY 7 cut(s) 118, 139, 144, 236, 451, 481, 520
CviQI GTAC 3 cut(s) 19, 111, 293
DdeI CTNAG 4 cut(s) 135, 145, 237, 345
DpnI GATC 3 cut(s) 92, 192, 564
DpnII GATC 3 cut(s) 90, 190, 562
DraIII CACNNNGTG 1 cut(s) 159
DriI GACNNNNNGTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 451
Eco147I AGGCCT 1 cut(s) 481
Eco24I GRGCYC 2 cut(s) 238, 453
Eco53kI GAGCTC 1 cut(s) 451
EcoICRI GAGCTC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 520
EcoT38I GRGCYC 2 cut(s) 238, 453
FaeI CATG 3 cut(s) 159, 173, 507
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 3 cut(s) 155, 169, 503
FbaI TGATCA 1 cut(s) 562
FokI GGATG 5 cut(s) 113, 192, 233, 254, 449
FriOI GRGCYC 2 cut(s) 238, 453
FspBI CTAG 2 cut(s) 321, 546
HaeIII GGCC 2 cut(s) 481, 520
HapII CCGG 2 cut(s) 125, 486
HgaI GACGC 1 cut(s) 39
Hin1II CATG 3 cut(s) 159, 173, 507
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 56, 512
HpaII CCGG 2 cut(s) 125, 486
Hpy166II GTNNAC 3 cut(s) 37, 113, 424
Hpy188I TCNGA 3 cut(s) 55, 220, 301
Hpy188III TCNNGA 5 cut(s) 83, 125, 239, 347, 486
Hpy8I GTNNAC 3 cut(s) 37, 113, 424
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 2 cut(s) 297, 428
HpyCH4IV ACGT 2 cut(s) 27, 414
HpyCH4V TGCA 4 cut(s) 153, 183, 377, 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 242, 251, 368
HpyF3I CTNAG 4 cut(s) 135, 145, 237, 345
HpySE526I ACGT 2 cut(s) 27, 414
Hsp92II CATG 3 cut(s) 159, 173, 507
Kpn2I TCCGGA 2 cut(s) 124, 485
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 90, 190, 562
LweI GCATC 3 cut(s) 91, 170, 232
MaeI CTAG 2 cut(s) 321, 546
MaeII ACGT 2 cut(s) 27, 414
MalI GATC 3 cut(s) 92, 192, 564
MboI GATC 3 cut(s) 90, 190, 562
MboII GAAGA 1 cut(s) 344
MfeI CAATTG 1 cut(s) 186
MhlI GDGCHC 3 cut(s) 78, 238, 453
MluCI AATT 4 cut(s) 128, 186, 390, 417
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 4 cut(s) 78, 218, 279, 444
MnlI CCTC 3 cut(s) 34, 225, 471
MroI TCCGGA 2 cut(s) 124, 485
MseI TTAA 2 cut(s) 69, 314
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 2 cut(s) 125, 486
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 522
MwoI GCNNNNNNNGC 4 cut(s) 150, 242, 251, 368
NdeII GATC 3 cut(s) 90, 190, 562
NlaIII CATG 3 cut(s) 159, 173, 507
NlaIV GGNNCC 3 cut(s) 123, 519, 543
PceI AGGCCT 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PfeI GAWTC 1 cut(s) 512
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 123, 519, 543
PspPI GGNCC 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 3 cut(s) 20, 112, 294
RsaNI GTAC 3 cut(s) 19, 111, 293
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 2 cut(s) 69, 314
Sau3AI GATC 3 cut(s) 90, 190, 562
Sau96I GGNCC 1 cut(s) 518
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 3 cut(s) 78, 238, 453
SetI ASST 7 cut(s) 30, 45, 120, 141, 417, 453, 547
SfaNI GCATC 3 cut(s) 91, 170, 232
SfcI CTRYAG 1 cut(s) 578
Sse9I AATT 4 cut(s) 128, 186, 390, 417
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 384
SspMI CTAG 2 cut(s) 321, 546
SstI GAGCTC 1 cut(s) 453
StuI AGGCCT 1 cut(s) 481
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 297, 428
TaiI ACGT 2 cut(s) 30, 417
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 128, 186, 390, 417
TatI WGTACW 2 cut(s) 110, 292
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 2 cut(s) 69, 314
Tru9I TTAA 2 cut(s) 69, 314
TscAI CASTG 2 cut(s) 514, 561
TspDTI ATGAA 2 cut(s) 186, 247
TspRI CASTG 2 cut(s) 514, 561
XapI RAATTY 1 cut(s) 128
XspI CTAG 2 cut(s) 321, 546
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.