Rh4BG177400

Belongs to the argonaute family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000575
Physical Location & Seq
Forward (+)
31456823 .. 31467154
10332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG177400.1

Sequence Viewer

Length: 504 bp
ATGGTGTTTTGTGTCCAAAGAATTGGACTTGATTGGTGGAGCAACAGTGACTTCTGTGGGCATGCTCCAGGATGGCAAGATGTGCAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGAAGAGCCTTCAACAAAAGTCCAATTCATTGTTCCCTTATGAGCTTCAAGAGATTGTCCATGCTAAGGCAGAGGCTATGGATTCATTTGAGCCCTATGGAAATGGAACAAATGGATCAAATGGAGAGAATGGCGCAAATGTAGAAAACGACGCAAATGGAGAAACCAGGGCAGATGGAAACGGGGCAGAGCATGCATTGCTACCCCCACCCCCTGTTATCCCACTAGATGTTGTTCCATTGCGTGCTCAAGTAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATAGATTTAAATCTCTTACTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009814 GO:0009816 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015030 GO:0016032 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016787 GO:0016788 GO:0018022 GO:0018193 GO:0018205 GO:0019048 GO:0019219 GO:0019222 GO:0019538 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0034641 GO:0034968 GO:0035194 GO:0035197 GO:0035198 GO:0035821 GO:0036211 GO:0040029 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0060255 GO:0061647 GO:0061980 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ArgoL1 ArgoL2 ArgoMid ArgoN PAZ Piwi

Protein Analysis

167

Amino Acids

18.26

Weight (kDa)

5.93

Isoelectric Point (pI)

21.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 89, 250
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 3 cut(s) 107, 140, 176
AjnI CCWGG 2 cut(s) 67, 293
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw21I GWGCWC 1 cut(s) 376
AlwI GGATC 2 cut(s) 89, 250
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 2 cut(s) 85, 113
AspLEI GCGC 2 cut(s) 263, 420
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 97, 125
BccI CCATC 2 cut(s) 66, 296
BciT130I CCWGG 2 cut(s) 69, 295
BfaI CTAG 2 cut(s) 353, 432
BisI GCNGC 2 cut(s) 86, 114
BlsI GCNGC 2 cut(s) 87, 115
Bme1390I CCNGG 2 cut(s) 69, 295
BmrFI CCNGG 2 cut(s) 69, 295
BmsI GCATC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 51
Bpu10I CCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 84, 360
BsaBI GATNNNNATC 1 cut(s) 487
BsaJI CCNNGG 2 cut(s) 294, 442
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse3DI GCAATG 2 cut(s) 323, 365
Bse8I GATNNNNATC 1 cut(s) 487
BseBI CCWGG 2 cut(s) 69, 295
BseDI CCNNGG 2 cut(s) 294, 442
BseGI GGATG 1 cut(s) 77
BseJI GATNNNNATC 1 cut(s) 487
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 2 cut(s) 323, 365
BseXI GCAGC 2 cut(s) 97, 125
BsgI GTGCAG 1 cut(s) 104
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 193
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 222, 376
Bsp143I GATC 2 cut(s) 94, 242
BspANI GGCC 1 cut(s) 441
BspHI TCATGA 1 cut(s) 91
BspPI GGATC 2 cut(s) 89, 250
BspQI GCTCTTC 1 cut(s) 125
BsrDI GCAATG 2 cut(s) 323, 365
BssECI CCNNGG 2 cut(s) 294, 442
BssMI GATC 2 cut(s) 94, 242
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 2 cut(s) 69, 295
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 125
BstAPI GCANNNNNTGC 3 cut(s) 82, 320, 325
BstC8I GCNNGC 3 cut(s) 63, 321, 372
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 263, 420
BstKTI GATC 2 cut(s) 97, 245
BstMBI GATC 2 cut(s) 94, 242
BstMWI GCNNNNNNNGC 3 cut(s) 82, 320, 325
BstNI CCWGG 2 cut(s) 69, 295
BstNSI RCATGY 2 cut(s) 65, 323
BstSCI CCNGG 2 cut(s) 67, 293
BstV1I GCAGC 2 cut(s) 97, 125
BstXI CCANNNNNNTGG 1 cut(s) 23
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 3 cut(s) 63, 321, 372
CciI TCATGA 1 cut(s) 91
CfoI GCGC 2 cut(s) 263, 420
CseI GACGC 1 cut(s) 287
CviAII CATG 5 cut(s) 62, 92, 122, 188, 320
CviJI RGCY 7 cut(s) 88, 116, 135, 172, 203, 220, 441
CviKI_1 RGCY 7 cut(s) 88, 116, 135, 172, 203, 220, 441
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 96, 244
DpnII GATC 2 cut(s) 94, 242
DraI TTTAAA 2 cut(s) 402, 487
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 67, 293
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 5 cut(s) 65, 95, 125, 191, 323
FaiI YATR 8 cut(s) 63, 93, 123, 168, 189, 206, 225, 321
FatI CATG 5 cut(s) 61, 91, 121, 187, 319
Fnu4HI GCNGC 2 cut(s) 86, 114
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 86, 114
FspBI CTAG 2 cut(s) 353, 432
GlaI GCGC 2 cut(s) 262, 419
GluI GCNGC 2 cut(s) 86, 114
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 441
HgaI GACGC 1 cut(s) 287
HhaI GCGC 2 cut(s) 263, 420
Hin1II CATG 5 cut(s) 65, 95, 125, 191, 323
Hin6I GCGC 2 cut(s) 261, 418
HinP1I GCGC 2 cut(s) 261, 418
HinfI GANTC 2 cut(s) 209, 463
Hpy188III TCNNGA 3 cut(s) 92, 107, 176
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 85, 113, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 320, 325
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 5 cut(s) 65, 95, 125, 191, 323
HspAI GCGC 2 cut(s) 261, 418
Kzo9I GATC 2 cut(s) 94, 242
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 2 cut(s) 39, 70
LpnPI CCDG 6 cut(s) 54, 81, 280, 307, 354, 405
Lsp1109I GCAGC 2 cut(s) 97, 125
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 353, 432
MaeIII GTNAC 1 cut(s) 47
MalI GATC 2 cut(s) 96, 244
MboI GATC 2 cut(s) 94, 242
MboII GAAGA 3 cut(s) 142, 418, 421
MfeI CAATTG 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 222, 376
MluCI AATT 3 cut(s) 21, 151, 426
MnlI CCTC 5 cut(s) 99, 108, 193, 431, 477
Mph1103I ATGCAT 1 cut(s) 325
MseI TTAA 2 cut(s) 401, 486
MspR9I CCNGG 2 cut(s) 69, 295
MunI CAATTG 1 cut(s) 426
MvaI CCWGG 2 cut(s) 69, 295
MwoI GCNNNNNNNGC 3 cut(s) 82, 320, 325
NdeII GATC 2 cut(s) 94, 242
NlaIII CATG 5 cut(s) 65, 95, 125, 191, 323
NmuCI GTSAC 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 325
NspI RCATGY 2 cut(s) 65, 323
PaeI GCATGC 2 cut(s) 65, 323
PagI TCATGA 1 cut(s) 91
PceI AGGCCT 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 209, 463
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 2 cut(s) 87, 115
Psp6I CCWGG 2 cut(s) 67, 293
PspGI CCWGG 2 cut(s) 67, 293
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 2 cut(s) 401, 486
SatI GCNGC 2 cut(s) 86, 114
Sau3AI GATC 2 cut(s) 94, 242
ScrFI CCNGG 2 cut(s) 69, 295
SduI GDGCHC 2 cut(s) 222, 376
SetI ASST 3 cut(s) 174, 394, 400
SfaNI GCATC 1 cut(s) 100
SmiI ATTTAAAT 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 99, 375
SmoI CTYRAG 2 cut(s) 99, 375
SphI GCATGC 2 cut(s) 65, 323
Sse9I AATT 3 cut(s) 21, 151, 426
SseBI AGGCCT 1 cut(s) 441
SspMI CTAG 2 cut(s) 353, 432
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 2 cut(s) 67, 293
StyI CCWWGG 1 cut(s) 442
SwaI ATTTAAAT 1 cut(s) 487
TaaI ACNGT 1 cut(s) 47
TasI AATT 3 cut(s) 21, 151, 426
TfiI GAWTC 2 cut(s) 209, 463
Tru1I TTAA 2 cut(s) 401, 486
Tru9I TTAA 2 cut(s) 401, 486
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 85, 113
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 144, 201
TspRI CASTG 1 cut(s) 52
XceI RCATGY 2 cut(s) 65, 323
XspI CTAG 2 cut(s) 353, 432
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.