Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

43535283 .. 43536399

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTTGGAACTGGCAGTGAGCATGCCATCAAGATGCTTGCTTATGCACATAAAACAGAGAATGAAAAGATCATCAGGGGGTTGGCAATGGGGATTGTCCTTACAGTTTATGGAAAAGAAGATGATGCAGATGTCAGTGATGATGTTAGAAGAACTGCTGTACTAGCACTCGGCTTTGTCATGTACTCCGAGCCAGAGCTGACCCCGGACCTTGTCTCCATGCTTTCTGCATTGTATAATCCACATGTTAGATATCGCACTGCTCTTGCAGTAGGCATTTCCTGCTCTGGTACAGGCTTGAGTGAGGCCATATCTTTGTACACTGATTGCATCGGCCTGGTCATGGTCCAGATCAGTGAAGCTAATGATTCTCGTGTAGGATCATTCAGGCGGCTTTTAGAGCGAATATTCTCAGACAAGCGGGAGAAGAGACAAACACAAATGGGGGCAATCCTAGCTGCCGGAATACTTGATTCTGGTGGTAGGAACGTCACCATAAAACTTGTGTCTGAGACGAAACATGACAAAGTCTGTGTTGTTGTTGGCCTGGCTGTTTTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

HEAT_2 PC_rep

Protein Analysis

188

Amino Acids

20.27

Weight (kDa)

6.42

Isoelectric Point (pI)

27.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	391, 421
AclWI	GGATC	1 cut(s)	388
AfaI	GTAC	4 cut(s)	162, 185, 292, 320
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	244
AjnI	CCWGG	2 cut(s)	336, 546
AluBI	AGCT	3 cut(s)	199, 362, 458
AluI	AGCT	3 cut(s)	199, 362, 458
Alw26I	GTCTC	3 cut(s)	220, 424, 506
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	3 cut(s)	306, 334, 544
ApeKI	GCWGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	208, 346
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	484, 550
AvaII	GGWCC	2 cut(s)	208, 346
BauI	CACGAG	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	338, 548
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	220, 424, 506
BfaI	CTAG	3 cut(s)	164, 455, 562
BisI	GCNGC	2 cut(s)	392, 459
BlsI	GCNGC	2 cut(s)	393, 460
Bme1390I	CCNGG	3 cut(s)	206, 338, 548
Bme18I	GGWCC	2 cut(s)	208, 346
BmgT120I	GGNCC	2 cut(s)	208, 346
BmrFI	CCNGG	3 cut(s)	206, 338, 548
BmsI	GCATC	3 cut(s)	24, 115, 339
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	338, 548
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	426, 501
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	445
BshFI	GGCC	3 cut(s)	308, 336, 546
BsiSI	CCGG	2 cut(s)	206, 462
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	3 cut(s)	220, 424, 506
BsmBI	CGTCTC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	308, 336, 546
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	69, 351, 380
BspACI	CCGC	2 cut(s)	391, 421
BspANI	GGCC	3 cut(s)	308, 336, 546
BspCNI	CTCAG	2 cut(s)	425, 502
BspPI	GGATC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	93
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	69, 351, 380
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	338, 548
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	318
BstC8I	GCNNGC	2 cut(s)	24, 39
BstDEI	CTNAG	2 cut(s)	412, 510
BstKTI	GATC	3 cut(s)	72, 354, 383
BstMAI	GTCTC	3 cut(s)	220, 424, 506
BstMBI	GATC	3 cut(s)	69, 351, 380
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 282, 400, 455
BstNI	CCWGG	2 cut(s)	338, 548
BstNSI	RCATGY	2 cut(s)	26, 248
BstSCI	CCNGG	3 cut(s)	204, 336, 546
BstV1I	GCAGC	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	308, 336, 546
BtsI	GCAGTG	2 cut(s)	22, 258
BtsIMutI	CAGTG	5 cut(s)	22, 142, 258, 321, 361
Cac8I	GCNNGC	2 cut(s)	24, 39
Cfr13I	GGNCC	2 cut(s)	208, 346
Csp6I	GTAC	4 cut(s)	161, 184, 291, 319
CviAII	CATG	6 cut(s)	23, 181, 220, 245, 343, 521
CviQI	GTAC	4 cut(s)	161, 184, 291, 319
DdeI	CTNAG	2 cut(s)	412, 510
DpnI	GATC	3 cut(s)	71, 353, 382
DpnII	GATC	3 cut(s)	69, 351, 380
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco32I	GATATC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	208, 346
EcoRII	CCWGG	2 cut(s)	336, 546
EcoRV	GATATC	1 cut(s)	254
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	6 cut(s)	26, 184, 223, 248, 346, 524
FatI	CATG	6 cut(s)	22, 180, 219, 244, 342, 520
FauI	CCCGC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	392, 459
Fsp4HI	GCNGC	2 cut(s)	392, 459
FspBI	CTAG	3 cut(s)	164, 455, 562
GluI	GCNGC	2 cut(s)	392, 459
HaeIII	GGCC	3 cut(s)	308, 336, 546
HapII	CCGG	2 cut(s)	206, 462
Hin1II	CATG	6 cut(s)	26, 184, 223, 248, 346, 524
HinfI	GANTC	2 cut(s)	368, 473
HpaII	CCGG	2 cut(s)	206, 462
HphI	GGTGA	2 cut(s)	484, 550
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	190, 415, 511
Hpy188III	TCNNGA	2 cut(s)	31, 349
Hpy8I	GTNNAC	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	5 cut(s)	47, 128, 230, 269, 330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 282, 400, 455
HpyF3I	CTNAG	2 cut(s)	412, 510
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	6 cut(s)	26, 184, 223, 248, 346, 524
Kzo9I	GATC	3 cut(s)	69, 351, 380
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	3 cut(s)	24, 115, 339
MaeI	CTAG	3 cut(s)	164, 455, 562
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	3 cut(s)	71, 353, 382
MboI	GATC	3 cut(s)	69, 351, 380
MboII	GAAGA	3 cut(s)	131, 162, 439
MnlI	CCTC	1 cut(s)	298
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	2 cut(s)	206, 462
MspR9I	CCNGG	3 cut(s)	206, 338, 548
MvaI	CCWGG	2 cut(s)	338, 548
MwoI	GCNNNNNNNGC	4 cut(s)	164, 282, 400, 455
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	3 cut(s)	69, 351, 380
NlaIII	CATG	6 cut(s)	26, 184, 223, 248, 346, 524
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	2 cut(s)	26, 248
PaeI	GCATGC	1 cut(s)	26
PciI	ACATGT	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	368, 473
PflFI	GACNNNGTC	2 cut(s)	212, 527
PkrI	GCNGC	2 cut(s)	393, 460
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	336, 546
PspGI	CCWGG	2 cut(s)	336, 546
PspPI	GGNCC	2 cut(s)	208, 346
PsyI	GACNNNGTC	2 cut(s)	212, 527
RsaI	GTAC	4 cut(s)	162, 185, 292, 320
RsaNI	GTAC	4 cut(s)	161, 184, 291, 319
RseI	CAYNNNNRTG	1 cut(s)	32
SatI	GCNGC	2 cut(s)	392, 459
Sau3AI	GATC	3 cut(s)	69, 351, 380
Sau96I	GGNCC	2 cut(s)	208, 346
ScrFI	CCNGG	3 cut(s)	206, 338, 548
SetI	ASST	6 cut(s)	201, 213, 364, 460, 492, 563
SfaNI	GCATC	3 cut(s)	24, 115, 339
SinI	GGWCC	2 cut(s)	208, 346
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
SphI	GCATGC	1 cut(s)	26
SsiI	CCGC	2 cut(s)	391, 421
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	3 cut(s)	164, 455, 562
StyD4I	CCNGG	3 cut(s)	204, 336, 546
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	492
TatI	WGTACW	3 cut(s)	160, 183, 318
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	2 cut(s)	368, 473
TscAI	CASTG	5 cut(s)	22, 142, 265, 328, 361
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	5 cut(s)	22, 142, 265, 328, 361
Tth111I	GACNNNGTC	2 cut(s)	212, 527
VpaK11BI	GGWCC	2 cut(s)	208, 346
XceI	RCATGY	2 cut(s)	26, 248
XspI	CTAG	3 cut(s)	164, 455, 562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.