Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

28085346 .. 28086001

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1218500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGCAGGTTGATGGCCCAGCAGAAAAGAAATCCGTGCCGGAGCCTTCTTTTGAGATTTTAACCAACCCTTCTAGGGTGGTTCCTTCTCAGGAGAAGTACATCAAATTTCCGGAAGAAAGTAGATACGTGCCCATTAAGTTAGCGCCTTCGGGGTTTGTTCTCTTGAGAGACCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

59

Amino Acids

6.56

Weight (kDa)

6.17

Isoelectric Point (pI)

70.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_C	PF18004	7 - 57	4.9e-15	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	104
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	109
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	132
BccI	CCATC	1 cut(s)	5
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	42, 81
BsaAI	YACGTR	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	38, 110
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	109
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	42, 81
BspTNI	GGTCTC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	15
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	2 cut(s)	15, 43
CviKI_1	RGCY	2 cut(s)	15, 43
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	2 cut(s)	38, 110
HhaI	GCGC	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	38, 110
Hpy188III	TCNNGA	3 cut(s)	89, 110, 163
HpyAV	CCTTC	4 cut(s)	54, 78, 93, 156
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	126
HspAI	GCGC	1 cut(s)	143
Kpn2I	TCCGGA	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	4 cut(s)	30, 51, 74, 123
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	126
MboII	GAAGA	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	1 cut(s)	104
MroI	TCCGGA	1 cut(s)	109
MseI	TTAA	2 cut(s)	59, 135
MspI	CCGG	2 cut(s)	38, 110
NlaIV	GGNNCC	2 cut(s)	42, 81
Ppu21I	YACGTR	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	42, 81
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	59, 135
Sau96I	GGNCC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	3 cut(s)	9, 129, 174
SgeI	CNNG	9 cut(s)	17, 29, 46, 50, 84, 101, 122, 139, 162
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	1 cut(s)	104
SspMI	CTAG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	129
TasI	AATT	1 cut(s)	104
TatI	WGTACW	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	59, 135
Tru9I	TTAA	2 cut(s)	59, 135
TspGWI	ACGGA	1 cut(s)	22
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.